Compound‐specific δ 15 N analyses of amino acids for trophic level estimation from indigenous and invasive freshwater amphipods

2020 ◽  
Vol 106 (1) ◽  
pp. 41-47
Author(s):  
René Sahm ◽  
Eike Sünger ◽  
Lisa Burmann ◽  
Jochen P. Zubrod ◽  
Ralf Schulz ◽  
...  
Keyword(s):  
Amino Acids ◽  
Trophic Level ◽  
Freshwater Amphipods

Stable carbon isotopic analysis of amino acids in a simplified food chain consisting of the green alga Chlorella spp., the calanoid copepod Calanus sinicus, and the Japanese anchovy (Engraulis japonicus)

2018 ◽  
Vol 96 (1) ◽  
pp. 23-30 ◽  
Author(s):  
Hai-zhen Liu ◽  
Lin Luo ◽  
De-ling Cai
Keyword(s):  
Amino Acids ◽  
Green Alga ◽  
Trophic Level ◽  
Food Chain ◽  
Calanoid Copepod ◽  
Trophic Levels ◽  
Japanese Anchovy ◽  
Calanus Sinicus ◽  
Engraulis Japonicus ◽  
Green Alga Chlorella

Japanese anchovy (Engraulis japonicus Temminck and Schlegel, 1846) is a keystone species in the food web of the Yellow Sea and East China Sea ecosystem. To study nutrient flow at intermediate and lower trophic levels, a controlled feeding experiment was carried out on a simplified food chain of the green alga Chlorella Beijerinck, 1890 – the calanoid copepod Calanus sinicus Brodsky, 1962 – E. japonicus. For the whole organism, bulk δ13C was found to be enriched with escalating trophic level, although the intertrophic gap in δ13C was slightly lower than the commonly reported 1.5‰ per increase in level. Furthermore, 15 amino acids (AAs) were detected in the studied organisms. Among them, the δ13C values of 12 AAs were determined and were found to exhibit diverse patterns of variation. The δ13C levels of essential AAs changed very little and were highly correlated across trophic levels, indicating that they underwent little trophic fractionation and were mainly ingested by the consumers from the proteins in their food. In contrast, the δ13C values of nonessential AAs differed greatly across trophic levels, indicating that the nonessential AAs in consumers were synthesized de novo from food proteins. The fractionation pattern of nonessential AAs may depend on the carbon pool and the AA composition of the organism at the lower trophic level.

scholarly journals Abyssal deposit feeders are secondary consumers of detritus and rely on nutrition derived from microbial communities in their guts

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sonia Romero-Romero ◽  
Elizabeth C. Miller ◽  
Jesse A. Black ◽  
Brian N. Popp ◽  
Jeffrey C. Drazen
Keyword(s):  
Amino Acids ◽  
Trophic Level ◽  
Trophic Ecology ◽  
Trophic Position ◽  
Essential Amino Acids ◽  
Abundant Species ◽  
Abyssal Plain ◽  
Gut Contents ◽  
Deposit Feeders ◽  
Secondary Consumers

AbstractTrophic ecology of detrital-based food webs is still poorly understood. Abyssal plains depend entirely on detritus and are among the most understudied ecosystems, with deposit feeders dominating megafaunal communities. We used compound-specific stable isotope ratios of amino acids (CSIA-AA) to estimate the trophic position of three abundant species of deposit feeders collected from the abyssal plain of the Northeast Pacific (Station M; ~ 4000 m depth), and compared it to the trophic position of their gut contents and the surrounding sediments. Our results suggest that detritus forms the base of the food web and gut contents of deposit feeders have a trophic position consistent with primary consumers and are largely composed of a living biomass of heterotrophic prokaryotes. Subsequently, deposit feeders are a trophic level above their gut contents making them secondary consumers of detritus on the abyssal plain. Based on δ13C values of essential amino acids, we found that gut contents of deposit feeders are distinct from the surrounding surface detritus and form a unique food source, which was assimilated by the deposit feeders primarily in periods of low food supply. Overall, our results show that the guts of deposit feeders constitute hotspots of organic matter on the abyssal plain that occupy one trophic level above detritus, increasing the food-chain length in this detritus-based ecosystem.

Importance of accurate trophic level determination by nitrogen isotope of amino acids for trophic magnification studies: A review

2018 ◽  
Vol 238 ◽  
pp. 677-690 ◽  
Author(s):  
Eun-Ji Won ◽  
Bohyung Choi ◽  
Seongjin Hong ◽  
Jong Seong Khim ◽  
Kyung-Hoon Shin
Keyword(s):  
Amino Acids ◽  
Trophic Level ◽  
Nitrogen Isotope

Homochirality as the Signature of Extra-Terrestrial Life

1997 ◽  
Vol 161 ◽  
pp. 505-510
Author(s):  
Alexandra J. MacDermott ◽  
Laurence D. Barron ◽  
Andrè Brack ◽  
Thomas Buhse ◽  
John R. Cronin ◽  
...  
Keyword(s):  
Amino Acids ◽  
Protein Synthesis ◽  
Optical Rotation ◽  
Physical Origin ◽  
Natural Choice ◽  
Rosetta Mission ◽  
Terrestrial Life ◽  
Subsurface Layers ◽  
Solar System Bodies ◽  
Origin Of Homochirality

AbstractThe most characteristic hallmark of life is its homochirality: all biomolecules are usually of one hand, e.g. on Earth life uses only L-amino acids for protein synthesis and not their D mirror images. We therefore suggest that a search for extra-terrestrial life can be approached as a Search for Extra- Terrestrial Homochirality (SETH). The natural choice for a SETH instrument is optical rotation, and we describe a novel miniaturized space polarimeter, called the SETH Cigar, which could be used to detect optical rotation as the homochiral signature of life on other planets. Moving parts are avoided by replacing the normal rotating polarizer by multiple fixed polarizers at different angles as in the eye of the bee. We believe that homochirality may be found in the subsurface layers on Mars as a relic of extinct life, and on other solar system bodies as a sign of advanced pre-biotic chemistry. We discuss the chiral GC-MS planned for the Roland lander of the Rosetta mission to a comet and conclude with theories of the physical origin of homochirality.

Hydrogen Cyanide Polymers from the Impact of Comet P/Shoemaker-Levy 9 on Jupiter

1997 ◽  
Vol 161 ◽  
pp. 179-187
Author(s):  
Clifford N. Matthews ◽  
Rose A. Pesce-Rodriguez ◽  
Shirley A. Liebman
Keyword(s):  
Amino Acids ◽  
Solar System ◽  
Hydrogen Cyanide ◽  
Nitrogen Heterocycles ◽  
Laboratory Studies ◽  
Heterogeneous Solids ◽  
The Many ◽  
Comet Halley ◽  
The Impact ◽  
By Products

AbstractHydrogen cyanide polymers – heterogeneous solids ranging in color from yellow to orange to brown to black – may be among the organic macromolecules most readily formed within the Solar System. The non-volatile black crust of comet Halley, for example, as well as the extensive orangebrown streaks in the atmosphere of Jupiter, might consist largely of such polymers synthesized from HCN formed by photolysis of methane and ammonia, the color observed depending on the concentration of HCN involved. Laboratory studies of these ubiquitous compounds point to the presence of polyamidine structures synthesized directly from hydrogen cyanide. These would be converted by water to polypeptides which can be further hydrolyzed to α-amino acids. Black polymers and multimers with conjugated ladder structures derived from HCN could also be formed and might well be the source of the many nitrogen heterocycles, adenine included, observed after pyrolysis. The dark brown color arising from the impacts of comet P/Shoemaker-Levy 9 on Jupiter might therefore be mainly caused by the presence of HCN polymers, whether originally present, deposited by the impactor or synthesized directly from HCN. Spectroscopic detection of these predicted macromolecules and their hydrolytic and pyrolytic by-products would strengthen significantly the hypothesis that cyanide polymerization is a preferred pathway for prebiotic and extraterrestrial chemistry.

Methionine-Specific Staining of Collagen

1982 ◽  
Vol 40 ◽  
pp. 294-295
Author(s):  
E.M. Kuhn ◽  
K.D. Marenus ◽  
M. Beer
Keyword(s):  
Amino Acids ◽  
Collagen Fibers ◽  
Type Iii Collagen ◽  
Type I ◽  
Electron Microscopic ◽  
Good Correspondence ◽  
Specific Staining ◽  
Type Iii ◽  
Different Types ◽  
Sulfur Containing

Fibers composed of different types of collagen cannot be differentiated by conventional electron microscopic stains. We are developing staining procedures aimed at identifying collagen fibers of different types.Pt(Gly-L-Met)Cl binds specifically to sulfur-containing amino acids. Different collagens have methionine (met) residues at somewhat different positions. A good correspondence has been reported between known met positions and Pt(GLM) bands in rat Type I SLS (collagen aggregates in which molecules lie adjacent to each other in exact register). We have confirmed this relationship in Type III collagen SLS (Fig. 1).

Prevalence of the pit and antipit in the genus Glycine

1987 ◽  
Vol 45 ◽  
pp. 986-987
Author(s):  
R. W. Yaklich ◽  
E. L. Vigil ◽  
W. P. Wergin
Keyword(s):  
Amino Acids ◽  
Endoplasmic Reticulum ◽  
Glycine Max ◽  
Seed Coat ◽  
Cell Types ◽  
Abaxial Surface ◽  
Legume Seed ◽  
Initial Report ◽  
Cone Cells ◽  
Glycine Max L

The legume seed coat is the site of sucrose unloading and the metabolism of imported ureides and synthesis of amino acids for the developing embryo. The cell types directly responsible for these functions in the seed coat are not known. We recently described a convex layer of tissue on the inside surface of the soybean (Glycine max L. Merr.) seed coat that was termed “antipit” because it was in direct opposition to the concave pit on the abaxial surface of the cotyledon. Cone cells of the antipit contained numerous hypertrophied Golgi apparatus and laminated rough endoplasmic reticulum common to actively secreting cells. The initial report by Dzikowski (1936) described the morphology of the pit and antipit in G. max and found these structures in only 68 of the 169 seed accessions examined.

Imaging polymers, proteins and dna in aqueous solutions with the atomic force microscope

1989 ◽  
Vol 47 ◽  
pp. 32-33
Author(s):  
S.A.C. Gould ◽  
B. Drake ◽  
C.B. Prater ◽  
A.L. Weisenhorn ◽  
S.M. Lindsay ◽  
...  
Keyword(s):  
Amino Acids ◽  
Dna Sequencing ◽  
Aqueous Solutions ◽  
Atomic Force Microscope ◽  
Piezoelectric Crystal ◽  
Atomic Force ◽  
Structure Of Molecules ◽  
Optical Lever

The atomic force microscope (AFM) is an instrument that can be used to image many samples of interest in biology and medicine. Images of polymerized amino acids, polyalanine and polyphenylalanine demonstrate the potential of the AFM for revealing the structure of molecules. Images of the protein fibrinogen which agree with TEM images demonstrate that the AFM can provide topographical data on larger molecules. Finally, images of DNA suggest the AFM may soon provide an easier and faster technique for DNA sequencing.The AFM consists of a microfabricated SiO2 triangular shaped cantilever with a diamond tip affixed at the elbow to act as a probe. The sample is mounted on a electronically driven piezoelectric crystal. It is then placed in contact with the tip and scanned. The topography of the surface causes minute deflections in the 100 μm long cantilever which are detected using an optical lever.

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