ribonuclease protection
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2021 ◽  
Vol 2021 (5) ◽  
pp. pdb.prot101832
Author(s):  
Michael R. Green ◽  
Joseph Sambrook

Author(s):  
Cristina Romero-López ◽  
Alicia Barroso-delJesus ◽  
Pablo Menendez ◽  
Alfredo Berzal-Herranz

The Analyst ◽  
2011 ◽  
Vol 136 (11) ◽  
pp. 2247 ◽  
Author(s):  
Yuka Yamaguchi ◽  
Shouki Yatsushiro ◽  
Shohei Yamamura ◽  
Hiroko Abe ◽  
Kaori Abe ◽  
...  

2010 ◽  
Vol 2010 ◽  
pp. 1-9 ◽  
Author(s):  
Renata Fuganti ◽  
Maria de Fátima Pires da Silva Machado ◽  
Valéria Stefania Lopes ◽  
João Flávio Veloso Silva ◽  
Carlos Alberto Arrabal Arias ◽  
...  

During earlier experiments, an SSR molecular marker (176 Soy HSP) showing high correlation (70%) with resistance/susceptibility to javanese root-knot nematodeMeloidogyne javanicawas identified in soybean. After being sequenced, results indicated that the SSR 176 Soy HSP marker was inserted in the promoter region ofGmhsp17.6-Lgene. It was also detected in this region that resistant genotypes presented insertions betweenAT(31)andAT(33)in size and susceptible genotypes,AT(9).Gmhsp17.6-Lgene coding region presented a perfect match in amino acid sequence in all soybean genotypes. A ribonuclease protection assay showed thatGmhsp17.6-Lgene mRNA transcripts were present in all genotypes. A real-time relative quantification (qPCR) indicated in the resistant individuals higher mRNA transcripts levels, which presented in the sequencing moreAT(n)insertions. These results suggest that the number ofAT(n)insertions inside this promoter region could modulate up or down gene levels. Those findings can lead to the possibility of manipulating, between some limits, the mRNA transcripts levels using different sizes ofAT(n)insertions.


2009 ◽  
Vol 297 (6) ◽  
pp. L1141-L1150 ◽  
Author(s):  
Katherine M. Howard

Platelet-activating factor (PAF) acetylhydrolase plays a crucial role inactivating the potent inflammatory mediator, PAF. PAF is implicated in the initiation and propagation of acute lung injury. Although PAF acetylhydrolase is a constitutively active plasma protein, increased PAF production during inflammatory events may necessitate an increase in PAF acetylhydrolase activity in the local environment. A series of experiments were conducted to determine whether the systemic administration of LPS to Sprague-Dawley rats resulted in enhanced expression of PAF acetylhydrolase in lung tissue. Ribonuclease protection assays revealed a dramatic increase in PAF acetylhydrolase mRNA, which peaked at 24 h following in vivo LPS administration. The increase in PAF acetylhydrolase mRNA was dose dependent and was detected when as little as 10 μg/kg of LPS was administered. Western blot analyses of lung tissue homogenates confirmed an increased production of PAF acetylhydrolase protein in response to LPS. In addition, Western blot analyses revealed the rat PAF acetylhydrolase protein exhibited heterogeneous molecular weights with predominant species migrating at 63 and 67 kDa. Some of the molecular weight heterogeneity likely resulted from extensive glycosylation of the secreted protein. Immunohistochemical analyses of lung tissue sections and colocalization experiments revealed a heterogenous population of cells that express the plasma-type PAF acetylhydrolase. Lung interstitial macrophages were PAF acetylhydrolase positive, but surprisingly, alveolar macrophages did not increase expression of PAF acetylhydrolase in response to systemic LPS administration. In addition, rat granulocytes consisting primarily of neutrophils were strongly positive for PAF acetylhydrolase in the LPS-exposed lung tissue. The absence of immunoreactive PAF acetylhydrolase in alveolar macrophages obtained from bronchial alveolar lavage confirmed that systemic LPS administration resulted in enhanced PAF acetylhydrolase expression only in a subset of lung macrophages.


2008 ◽  
Vol 295 (3) ◽  
pp. H1303-H1310 ◽  
Author(s):  
S. Kelly Ambler ◽  
Yvonne K. Hodges ◽  
Gayle M. Jones ◽  
Carlin S. Long ◽  
Lawrence D. Horwitz

The prolonged production of reactive oxygen species due to ischemia-reperfusion (I/R) is a potential cause of the pathological remodeling that frequently precedes heart failure. We tested the ability of a potent dithiol antioxidant, bucillamine, to protect against the long-term consequences of I/R injury in a murine model of myocardial infarction. After transiently occluding the left anterior descending coronary artery for 30 min, saline or bucillamine (10 μg/g body wt) was injected intravenously as a bolus within the first 5 min of reperfusion. The antioxidant treatment continued with daily subcutaneous injections for 4 wk. There were no differences in infarct sizes between bucillamine- and saline-treated animals. After 4 wk of reperfusion, cardiac hypertrophy was decreased by bucillamine treatment (ventricular weight-to-body weight ratios: I/R + saline, 4.5 ± 0.2 mg/g vs. I/R + bucillamine, 4.2 ± 0.1 mg/g; means ± SE; P < 0.05). Additionally, the hearts of bucillamine-treated mice had improved contractile function (echocardiographic measurement of fractional shortening) relative to saline controls: I/R + saline, 32 ± 3%, versus I/R + bucillamine, 41 ± 4% ( P < 0.05). Finally, I/R-induced injury in the saline-treated mice was accompanied by a fetal pattern of gene expression determined by ribonuclease protection assay that was consistent with pathological cardiac hypertrophy and remodeling [increased atrial natriuretic peptide, β-myosin heavy chain (MHC), skeletal α-actin; decreased sarco(endo)plasmic reticulum Ca2+ ATPase 2a, and α-MHC-to-β-MHC ratio]. These changes in gene expression were significantly attenuated by bucillamine. Therefore, treatment with a dithiol antioxidant for 4 wk after I/R preserved ventricular function and prevented the abnormal pattern of gene expression associated with pathological cardiac remodeling.


2008 ◽  
Vol 56 (15) ◽  
pp. 6246-6251 ◽  
Author(s):  
Momoko Kitaoka ◽  
Nobuko Okamura ◽  
Hirofumi Ichinose ◽  
Masahiro Goto

2008 ◽  
Vol 154 (1) ◽  
pp. 117-125 ◽  
Author(s):  
G. Vadamalai ◽  
A.A.F.L.K. Perera ◽  
D. Hanold ◽  
M.A. Rezaian ◽  
J.W. Randles

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