amplified rdna restriction analysis
Recently Published Documents


TOTAL DOCUMENTS

27
(FIVE YEARS 0)

H-INDEX

15
(FIVE YEARS 0)

2014 ◽  
Vol 2014 ◽  
pp. 1-14 ◽  
Author(s):  
Gauri A. Achari ◽  
Raman Ramesh

Eggplant (Solanum melongenaL.) is one of the solanaceous crops of economic and cultural importance and is widely cultivated in the state of Goa, India. Eggplant cultivation is severely affected by bacterial wilt caused byRalstonia solanacearumthat colonizes the xylem tissue. In this study, 167 bacteria were isolated from the xylem of healthy eggplant, chilli, andSolanum torvumSw. by vacuum infiltration and maceration. Amplified rDNA restriction analysis (ARDRA) grouped these xylem residing bacteria (XRB) into 38 haplotypes. Twenty-eight strains inhibited growth ofR. solanacearumand produced volatile and diffusible antagonistic compounds and plant growth promoting substancesin vitro. Antagonistic strains XB86, XB169, XB177, and XB200 recorded a biocontrol efficacy greater than 85% against BW and exhibited 12%–22 % increase in shoot length in eggplant in the greenhouse screening. 16S rRNA based identification revealed the presence of 23 different bacterial genera. XRB with high biocontrol and plant growth promoting activities were identified as strains ofStaphylococcussp.,Bacillussp.,Streptomycessp.,Enterobactersp., andAgrobacteriumsp. This study is the first report on identity of bacteria from the xylem of solanaceous crops having traits useful in cultivation of eggplant.


2013 ◽  
Vol 2013 ◽  
pp. 1-5 ◽  
Author(s):  
Vijay Kumar ◽  
Rajneesh Rana ◽  
Somya Mehra ◽  
Pramod Kumar Rout

Association of Mycoplasma mycoides subspecies capri (Mmc) with natural goat mastitis has been studied earlier largely by detecting the Mmc DNA using molecular methods. However, report on detection of cultivable Mmc isolates from natural goat-mastitis milk is still very rare. In this study, Mmc was isolated from milk samples () of goats with or without clinical signs of mastitis. Mmc isolates were further characterized by biochemical and species-specific PCR methods. Intra species strain variation was also studied by 16S amplified rDNA restriction analysis (16S ARDRA). The study recovered a total of 6 Mmc isolates (3.5%). Three types of intraspecies variants among the recovered Mmc isolates were found by 16S ARDRA. The study concluded that Mmc may be an etiological agent of mycoplasmal mastitis in Indian goat herds.


2011 ◽  
Vol 57 (5) ◽  
pp. 447-452 ◽  
Author(s):  
Lena Hausdorf ◽  
Antje Fröhling ◽  
Oliver Schlüter ◽  
Michael Klocke

Vegetables are washed after harvest to remove unwanted organic and inorganic particles, but wash water contaminated with certain pathogenic microorganisms can potentially contaminate produce. In this study, the microbial diversity of wash water was analyzed in samples taken from a carrot-processing facility. A 16S rRNA gene library with 427 clones was constructed and analyzed by amplified rDNA restriction analysis. For taxonomic classification, the 16S rRNA gene nucleotide sequences of 94 amplified rDNA restriction analysis fingerprints were determined. Each fingerprint indicates a distinct group of microorganisms. The nucleotide sequences were assigned to corresponding reference species. The most prevalent genus was Tolumonas , with 26% of the clones, followed by Acinetobacter and Flacobacterium , with 11% each. The latter two genera contain species that are known to cause nosocomial infections. The fourth most common genus was Arcobacter , comprising 9% of all clones. Some species of Arcobacter are considered to be emerging food pathogens, mainly associated with the contamination of meat products. So far, they have not been considered as contaminants of fresh produce. Based on the sequence data, an Arcobacter-specific PCR assay was developed to facilitate the detection of vegetable-associated Arcobacter strains.


2010 ◽  
Vol 48 (3) ◽  
pp. 297-306 ◽  
Author(s):  
Spyridon Ntougias ◽  
Nektarios Kavroulakis ◽  
Kalliope K. Papadopoulou ◽  
Constantinos Ehaliotis ◽  
Georgios I. Zervakis

2009 ◽  
Vol 96 (4) ◽  
pp. 659-664 ◽  
Author(s):  
Menachem Y. Sklarz ◽  
Roey Angel ◽  
Osnat Gillor ◽  
M. Ines M. Soares

Sign in / Sign up

Export Citation Format

Share Document