Technologies for Large-Scale Proteomic Tandem Mass Spectrometry

2006 ◽  
pp. 91-109
Author(s):  
David L. Tabb ◽  
John R. Yates
Author(s):  
Haipeng Wang

Protein identification (sequencing) by tandem mass spectrometry is a fundamental technique for proteomics which studies structures and functions of proteins in large scale and acts as a complement to genomics. Analysis and interpretation of vast amounts of spectral data generated in proteomics experiments present unprecedented challenges and opportunities for data mining in areas such as data preprocessing, peptide-spectrum matching, results validation, peptide fragmentation pattern discovery and modeling, and post-translational modification (PTM) analysis. This article introduces the basic concepts and terms of protein identification and briefly reviews the state-of-the-art relevant data mining applications. It also outlines challenges and future potential hot spots in this field.


2020 ◽  
Vol 103 (6) ◽  
pp. 1486-1497
Author(s):  
Anirban Dutta ◽  
Sandip Hingmire ◽  
Kaushik Banerjee

Abstract Background Moringa pods are known for their nutritional and health benefits. The cultivation of this crop receives frequent pesticide applications. In the absence of risk assessment data, maximum residue limits of pesticides in this crop are considered at the default level (0.01 mg/kg). However, there exists scarcely any validated method for pesticide residue analysis in this matrix. Objective This study was undertaken to develop and validate a multiresidue method for the simultaneous analysis of multi-class pesticides in moringa pods by gas chromatography-tandem mass spectrometry (GC-MS/MS), and liquid chromatography-tandem mass spectrometry (LC-MS/MS). Method The homogenized sample (10 g) was extracted with acetonitrile (10 mL). The extract was cleaned by dispersive solid-phase extraction using a combination of 50 mg primary secondary amine, 5 mg graphitized carbon black, and 25 mg C18 sorbents, and was directly analyzed by LC-MS/MS. Another portion of the extract was reconstituted in ethyl acetate before GC-MS/MS analysis. The method was validated as per the SANTE/12682/2019 guidelines using GC-MS/MS (180 pesticides) and LC-MS/MS instruments (203 pesticides). Results The method provided a satisfactory analysis of the targeted pesticides with good calibration linearity (r2>0.99), high precision (RSD < 20%), and accuracy (recoveries, 70 to 120%). The reconstitution of the acetonitrile extract in ethyl acetate significantly reduced the matrix effects on GC-MS/MS analysis. The use of matrix-matched standards could correct all recoveries. Conclusions The method offered a large-scale analysis of multi-class pesticides with high accuracy, and precision at 10 ng/g, and higher levels. The method performance complied with the regulatory requirements, and thus, can be implemented in routine testing purposes. Highlights The study reports a validated method for large-scale multiresidue analysis of pesticides in moringa matrix for the first time. The method provided a high throughput analysis of multi-class pesticides with satisfactory selectivity, sensitivity, accuracy, and precision.


2014 ◽  
Vol 13 (4) ◽  
pp. 1128-1136 ◽  
Author(s):  
Jian Wang ◽  
Veronica G. Anania ◽  
Jeff Knott ◽  
John Rush ◽  
Jennie R. Lill ◽  
...  

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