Mechanistic Insight into the Catalytic Activity of ββα-Metallonucleases from Computer Simulations: Vibrio vulnificus Periplasmic Nuclease as a Test Case

ChemBioChem ◽  
2011 ◽  
Vol 12 (17) ◽  
pp. 2615-2622 ◽  
Author(s):  
Juan A. Bueren-Calabuig ◽  
Claire Coderch ◽  
Eva Rico ◽  
Antonio Jiménez-Ruiz ◽  
Federico Gago
2020 ◽  
Vol 10 (1) ◽  
pp. 169-179 ◽  
Author(s):  
Li Zhou ◽  
Datai Liu ◽  
Haiyi Lan ◽  
Xiujian Wang ◽  
Cunyuan Zhao ◽  
...  

The origin of different catalytic activity between two structurally similar Lewis basic bifunctional catalysts.


2018 ◽  
Vol 5 (15) ◽  
pp. 2332-2339 ◽  
Author(s):  
Langhuan Jiang ◽  
Fang Huang ◽  
Qiong Wang ◽  
Chuanzhi Sun ◽  
Jianbiao Liu ◽  
...  

The origin of the Ni-mediated decarbonylation catalytic cycle of unstrained ketones was explored using the DFT calculation method.


Genetics ◽  
2002 ◽  
Vol 162 (2) ◽  
pp. 721-736 ◽  
Author(s):  
Sandra N Garcia ◽  
Lorraine Pillus

Abstract Silencing provides a critical means of repressing transcription through the assembly and modification of chromatin proteins. The NAD+-dependent deacetylation of histones by the Sir2p family of proteins lends mechanistic insight into how SIR2 contributes to silencing. Here we describe three locus-specific sir2 mutants that have a spectrum of silencing phenotypes in yeast. These mutants are dependent on SIR1 for silencing function at the HM silent mating-type loci, display distinct phenotypes at the rDNA, and have dominant silencing defects at the telomeres. Telomeric silencing is restored if the mutant proteins are directly tethered to subtelomeric regions, via a Gal4p DNA-binding domain (GBD), or are recruited by tethered GBD-Sir1p. These sir2 mutations are found within conserved residues of the SIR2 family and lead to defects in catalytic activity. Since one of the mutations lies outside the previously defined minimal catalytic core, our results show that additional regions of Sir2p can be important for enzymatic activity and that differences in levels of activity may have distinct effects at the silenced loci.


2013 ◽  
Vol 15 (38) ◽  
pp. 16172 ◽  
Author(s):  
Zhigang Deng ◽  
Xiaoqing Lu ◽  
Zengqiang Wen ◽  
Shuxian Wei ◽  
Yunjie Liu ◽  
...  

RSC Advances ◽  
2021 ◽  
Vol 11 (34) ◽  
pp. 20961-20969
Author(s):  
Yunqing He ◽  
Wanli Nie ◽  
Ying Xue ◽  
Qishan Hu

Hydrosilylation or amination products? It depends on water amount and nucleophiles like excess water or produced/added amines.


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