Efficient Editing of Silver Nanoclusters by Changing Simply One Cytosine in a DNA Template

ChemBioChem ◽  
2020 ◽  
Author(s):  
Jinliang Ma ◽  
Kexin Li ◽  
Shaobin Gu
2018 ◽  
Vol 2018 ◽  
pp. 1-1
Author(s):  
J. Christian Léon ◽  
Linda Stegemann ◽  
Martin Peterlechner ◽  
Stefanie Litau ◽  
Gerhard Wilde ◽  
...  

RSC Advances ◽  
2015 ◽  
Vol 5 (119) ◽  
pp. 98467-98471 ◽  
Author(s):  
Jin-Liang Ma ◽  
Bin-Cheng Yin ◽  
Bang-Ce Ye

We have developed a novel type of intensely fluorescent DNA-templated silver nanoclusters (DNA/AgNCs), which is in the form of the intergrowth of a Ag emitter pair.


Chemosensors ◽  
2021 ◽  
Vol 9 (12) ◽  
pp. 349
Author(s):  
Patrycja Filipczuk ◽  
Angelika Świtalska ◽  
Joanna Kosman ◽  
Grzegorz Nowaczyk ◽  
Anna Dembska

In this study, we examined properties of silver nanoclusters, which are AgNCs stabilized by DNA oligonucleotide scaffold containing G-quadruplex-forming sequences: human telomeric (Tel22) or thrombin-binding aptamer (TBA). Thus, we obtained two fluorescent probes abbreviated as Tel22C12-AgNCs and TBAC12-AgNCs, which were characterized using absorption, circular dichroism and fluorescence spectroscopy. Both probes emit green and red fluorescence. The presence of silver nanoclusters did not destabilize the formed G-quadruplexes. The structural changes of probes upon binding K+ or Na+ ions cause quenching in their red emission. Green emission was slightly quenched only in the case of Tel22C12-AgNCs; on the contrary, for TBAC12-AgNC’s green emission, we observed an increasing fluorescence signal. Moreover, the Tel22C12-AgNCs system shows not only a higher binding preference for K+ over Na+, but it was able to monitor small changes in K+ concentrations in the buffer mimicking extracellular conditions (high content of Na+ ions). These results suggest that Tel22C12-AgNCs exhibit the potential to monitor transmembrane potassium transport.


Nanomaterials ◽  
2019 ◽  
Vol 9 (5) ◽  
pp. 667 ◽  
Author(s):  
Riddhi Nagda ◽  
Pratik Shah ◽  
Chang Seop Lee ◽  
Sooyeon Park ◽  
Seong Wook Yang

DNA-encapsulated Silver Nanoclusters (DNA/AgNCs) based sensors have gained increasing attention in past years due to their diverse applications in bioimaging, biosensing, and enzymatic assays. Given the potential of DNA/AgNCs for practical applications, the systematic studies of the fluorescent stability over an extended period is necessary. However, the correlation between nucleic acid properties and the long-term stability of DNA/AgNCs is less known. With locking-to-unlocking sensors, in which the secondary structure of DNA template is standardized, we investigated the correlation between the DNA structure and the fluorescence stability of AgNCs. Post-synthesis of DNA/AgNCs, the fluorescence, and structures of templates were monitored over three weeks. By combining the fluorescence spectroscopy with the in-gel fluorescent assay, we found that AgNCs encapsulated by dimer-structured DNA/AgNCs templates were more stable than those of hairpin-structured DNA/AgNCs templates. While the orange fluorescence from the dimer templates increased over three weeks, the red fluorescence from the hairpin templates was diminished by >80% within two days at room temperature. Further tests revealed that hairpin-encapsulated red-emissive AgNCs is more sensitive to oxidation by atmospheric oxygen compared to dimer encapsulated orange AgNCs. Our observations may provide an important clue in encapsulating photophysically more stable AgNCs by tuning the DNA secondary structures. The proposed strategy here can be essential for pragmatic applications of DNA/AgNCs templates.


Nanoscale ◽  
2018 ◽  
Vol 10 (44) ◽  
pp. 20717-20722 ◽  
Author(s):  
Pratik Shah ◽  
Suk Won Choi ◽  
Riddhi Nagda ◽  
Reka Geczy ◽  
Seok Keun Cho ◽  
...  

The structural shift of a DNA hairpin-dimer is as important as the DNA sequence in determining the fluorescent properties of DNA-stabilized silver nanoclusters (DNA/AgNCs).


The Analyst ◽  
2017 ◽  
Vol 142 (10) ◽  
pp. 1765-1771 ◽  
Author(s):  
Hong-Ya Wang ◽  
Jin-Liang Ma ◽  
Bin-Cheng Yin ◽  
Bang-Ce Ye

We have developed a novel method for detecting nicotinamide adenine dinucleotide (NAD+) based on fluorescent silver nanoclusters (AgNCs) stabilized by a dumbbell-shaped DNA template containing two cytosine-loops joined in a dsDNA stem.


2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
J. Christian Léon ◽  
Linda Stegemann ◽  
Martin Peterlechner ◽  
Stefanie Litau ◽  
Gerhard Wilde ◽  
...  

A series of DNA double helices containing different numbers of silver(I)-mediated base pairs involving the artificial nucleobases imidazole or 2-methylimidazole has been applied for the generation of DNA-templated silver nanoclusters. The original Ag(I)-containing nucleic acids as well as the resulting nanoclusters and nanoparticles have been characterized by means of UV/Vis spectroscopy, circular dichroism (CD) spectroscopy, fluorescence spectroscopy, and transmission electron microscopy (TEM). The results show for the first time that metal-mediated base pairs can be used for the templated growth of metal nanoclusters.


2020 ◽  
Vol 2 (4) ◽  
pp. 89-92
Author(s):  
Muhammad Amir ◽  
Sabeera Afzal ◽  
Alia Ishaq

Polymerases were revealed first in 1970s. Most important to the modest perception the enzyme responsible for nuclear DNA replication that was pol , for DNA repair pol and for mitochondrial DNA replication pol  DNA construction and renovation done by DNA polymerases, so directing both the constancy and discrepancy of genetic information. Replication of genome initiate with DNA template-dependent fusion of small primers of RNA. This preliminary phase in replication of DNA demarcated as de novo primer synthesis which is catalyzed by specified polymerases known as primases. Sixteen diverse DNA-synthesizing enzymes about human perspective are devoted to replication, reparation, mutilation lenience, and inconsistency of nuclear DNA. But in dissimilarity, merely one DNA polymerase has been called in mitochondria. It has been suggest that PrimPol is extremely acting the roles by re-priming DNA replication in mitochondria to permit an effective and appropriate way replication to be accomplished. Investigations from a numeral of test site have significantly amplified our appreciative of the role, recruitment and regulation of the enzyme during DNA replication. Though, we are simply just start to increase in value the versatile roles that play PrimPol in eukaryote.


2016 ◽  
Vol 12 (6) ◽  
pp. 612-619
Author(s):  
Dittapong Pairoh ◽  
Kanokwan Chaiendoo ◽  
Wittaya Ngeontae ◽  
Rodjana Burakham

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