Self-Assembly Structures of 1H-Indazoles in the Solution and Solid Phases: A Vibrational (IR, FIR, Raman, and VCD) Spectroscopy and Computational Study

ChemPhysChem ◽  
2013 ◽  
Vol 14 (14) ◽  
pp. 3355-3360 ◽  
Author(s):  
J. R. Avilés Moreno ◽  
M. M. Quesada Moreno ◽  
J. J. López González ◽  
R. M. Claramunt ◽  
C. López ◽  
...  
Soft Matter ◽  
2013 ◽  
Vol 9 (33) ◽  
pp. 8005 ◽  
Author(s):  
Magdalena Gruziel ◽  
Wojciech Dzwolak ◽  
Piotr Szymczak

2013 ◽  
Vol 117 (38) ◽  
pp. 19426-19435 ◽  
Author(s):  
Chris R. L. Chapman ◽  
Elvis C.M. Ting ◽  
Ashley Kereszti ◽  
Irina Paci

Inorganics ◽  
2019 ◽  
Vol 7 (10) ◽  
pp. 119 ◽  
Author(s):  
Hardin ◽  
Ellington ◽  
Nguyen ◽  
Rheingold ◽  
Tschumper ◽  
...  

Two new aromatic pyrimidine-based derivatives designed specifically for halogen bond directed self-assembly are investigated through a combination of high-resolution Raman spectroscopy, X-ray crystallography, and computational quantum chemistry. The vibrational frequencies of these new molecular building blocks, pyrimidine capped with furan (PrmF) and thiophene (PrmT), are compared to those previously assigned for pyrimidine (Prm). The modifications affect only a select few of the normal modes of Prm, most noticeably its signature ring breathing mode, ν1. Structural analyses afforded by X-ray crystallography, and computed interaction energies from density functional theory computations indicate that, although weak hydrogen bonding (C–H···O or C–H···N interactions) is present in these pyrimidine-based solid-state co-crystals, halogen bonding and π-stacking interactions play more dominant roles in driving their molecular-assembly.


2015 ◽  
Vol 48 (4) ◽  
pp. 1256-1261 ◽  
Author(s):  
Tatsuhiro Iwama ◽  
Nabil Laachi ◽  
Bongkeun Kim ◽  
Michael Carilli ◽  
Kris T. Delaney ◽  
...  

2014 ◽  
Vol 25 (6-7) ◽  
pp. 507-515 ◽  
Author(s):  
María Mar Quesada-Moreno ◽  
Juan Ramón Avilés-Moreno ◽  
Juan Jesús López-González ◽  
Rosa María Claramunt ◽  
Concepción López ◽  
...  

2019 ◽  
Author(s):  
Jyoti Rani ◽  
Hatem M. Titi ◽  
Ranjan Patra

<p>We demonstrate herein a computational study probing the influence of metalloporphyrin ring current directionality on intermolecular halogen bonding (XB) during supramolecular self-assembly. The results demonstrate that porphyrin ring current can activate or deactivate halogen bonding interactions, an essential superamolecular driving force.</p>


2010 ◽  
Vol 8 (59) ◽  
pp. 826-841 ◽  
Author(s):  
Mario Orsi ◽  
Massimo G. Noro ◽  
Jonathan W. Essex

Triclocarban and triclosan, two potent antibacterial molecules present in many consumer products, have been subject to growing debate on a number of issues, particularly in relation to their possible role in causing microbial resistance. In this computational study, we present molecular-level insights into the interaction between these antimicrobial agents and hydrated phospholipid bilayers (taken as a simple model for the cell membrane). Simulations are conducted by a novel ‘dual-resolution’ molecular dynamics approach which combines accuracy with efficiency: the antimicrobials, modelled atomistically, are mixed with simplified (coarse-grain) models of lipids and water. A first set of calculations is run to study the antimicrobials' transfer free energies and orientations as a function of depth inside the membrane. Both molecules are predicted to preferentially accumulate in the lipid headgroup–glycerol region; this finding, which reproduces corresponding experimental data, is also discussed in terms of a general relation between solute partitioning and the intramembrane distribution of pressure. A second set of runs involves membranes incorporated with different molar concentrations of antimicrobial molecules (up to one antimicrobial per two lipids). We study the effects induced on fundamental membrane properties, such as the electron density, lateral pressure and electrical potential profiles. In particular, the analysis of the spontaneous curvature indicates that increasing antimicrobial concentrations promote a ‘destabilizing’ tendency towards non-bilayer phases, as observed experimentally. The antimicrobials' influence on the self-assembly process is also investigated. The significance of our results in the context of current theories of antimicrobial action is discussed.


2020 ◽  
Author(s):  
Jyoti Rani ◽  
Vratta Grover ◽  
Swati Dhamija ◽  
Hatem M. Titi ◽  
Ranjan Patra

<p>We demonstrate herein a computational study probing the influence of metalloporphyrin ring current directionality on intermolecular halogen bonding (XB) during supramolecular self-assembly. The results demonstrate that porphyrin ring current can activate or deactivate halogen bonding interactions, an essential superamolecular driving force.</p>


2015 ◽  
Vol 14 (1) ◽  
pp. 013501 ◽  
Author(s):  
Tatsuhiro Iwama ◽  
Nabil Laachi ◽  
Kris T. Delaney ◽  
Glenn H. Fredrickson

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