Tensorial elastic network model for protein dynamics: Integration of the anisotropic network model with bond-bending and twist elasticities

2012 ◽  
Vol 80 (12) ◽  
pp. 2692-2700 ◽  
Author(s):  
Amit Srivastava ◽  
Roee Ben Halevi ◽  
Alexander Veksler ◽  
Rony Granek
Keyword(s):  
Protein Dynamics ◽  
Network Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Bond Bending ◽  
Anisotropic Network ◽  
Anisotropic Network Model

scholarly journals Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model

2016 ◽  
Vol 145 (1) ◽  
pp. 014104 ◽  
Author(s):  
Chunhua Li ◽  
Dashuai Lv ◽  
Lei Zhang ◽  
Feng Yang ◽  
Cunxin Wang ◽  
...  
Keyword(s):  
Network Model ◽  
Coarse Grained ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Folding Dynamics

scholarly journals Generalization of the elastic network model for the study of large conformational changes in biomolecules

2018 ◽  
Vol 20 (25) ◽  
pp. 17020-17028 ◽  
Author(s):  
Adolfo B. Poma ◽  
Mai Suan Li ◽  
Panagiotis E. Theodorakis
Keyword(s):  
Network Model ◽  
Conformational Changes ◽  
Elastic Network Model ◽  
Elastic Network

The generalized elastic network (GEN) model enables the study of large conformational changes in proteins.

A complex multiscale virtual particle model based elastic network model (CMVP-ENM) for the normal mode analysis of biomolecular complexes

2019 ◽  
Vol 21 (8) ◽  
pp. 4359-4366 ◽  
Author(s):  
D. Vijay Anand ◽  
Zhenyu Meng ◽  
Kelin Xia
Keyword(s):  
Normal Mode ◽  
Network Model ◽  
Material Properties ◽  
Normal Mode Analysis ◽  
Mode Analysis ◽  
Particle Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Virtual Particle ◽  
Biomolecular Complexes

The CMVP-ENM for virus normal mode analysis. With a special ratio parameter, CMVP-ENM can characterize the multi-material properties of biomolecular complexes and systematically enhance or suppress the modes for different components.

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