scholarly journals Domain Motions and Functionally-Key Residues of l-Alanine Dehydrogenase Revealed by an Elastic Network Model

2015 ◽  
Vol 16 (12) ◽  
pp. 29383-29397 ◽  
Author(s):  
Xing-Yuan Li ◽  
Jing-Chao Zhang ◽  
Yan-Ying Zhu ◽  
Ji-Guo Su
Keyword(s):  
Network Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Alanine Dehydrogenase ◽  
Domain Motions ◽  
Key Residues

Identification of functionally key residues in maltose transporter with an elastic network model-based thermodynamic method

2016 ◽  
Vol 114 (22) ◽  
pp. 3407-3417
Author(s):  
Dashuai Lv ◽  
Chunhua Li ◽  
Jianjun Tan ◽  
Xiaoyi Zhang ◽  
Cunxin Wang ◽  
...  
Keyword(s):  
Network Model ◽  
Thermodynamic Method ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Model Based ◽  
Maltose Transporter ◽  
Key Residues

scholarly journals A mass weighted chemical elastic network model elucidates closed form domain motions in proteins

2013 ◽  
Vol 22 (5) ◽  
pp. 605-613 ◽  
Author(s):  
Min Hyeok Kim ◽  
Sangjae Seo ◽  
Jay Il Jeong ◽  
Bum Joon Kim ◽  
Wing Kam Liu ◽  
...  
Keyword(s):  
Closed Form ◽  
Network Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Domain Motions ◽  
Form Domain

scholarly journals Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model

2016 ◽  
Vol 145 (1) ◽  
pp. 014104 ◽  
Author(s):  
Chunhua Li ◽  
Dashuai Lv ◽  
Lei Zhang ◽  
Feng Yang ◽  
Cunxin Wang ◽  
...  
Keyword(s):  
Network Model ◽  
Coarse Grained ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Folding Dynamics

scholarly journals Generalization of the elastic network model for the study of large conformational changes in biomolecules

2018 ◽  
Vol 20 (25) ◽  
pp. 17020-17028 ◽  
Author(s):  
Adolfo B. Poma ◽  
Mai Suan Li ◽  
Panagiotis E. Theodorakis
Keyword(s):  
Network Model ◽  
Conformational Changes ◽  
Elastic Network Model ◽  
Elastic Network

The generalized elastic network (GEN) model enables the study of large conformational changes in proteins.

A complex multiscale virtual particle model based elastic network model (CMVP-ENM) for the normal mode analysis of biomolecular complexes

2019 ◽  
Vol 21 (8) ◽  
pp. 4359-4366 ◽  
Author(s):  
D. Vijay Anand ◽  
Zhenyu Meng ◽  
Kelin Xia
Keyword(s):  
Normal Mode ◽  
Network Model ◽  
Material Properties ◽  
Normal Mode Analysis ◽  
Mode Analysis ◽  
Particle Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Virtual Particle ◽  
Biomolecular Complexes

The CMVP-ENM for virus normal mode analysis. With a special ratio parameter, CMVP-ENM can characterize the multi-material properties of biomolecular complexes and systematically enhance or suppress the modes for different components.

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