Synthesis of Amino-Acid-Derived Nucleo(side/tide) Analogs for Peptide-Derived Enantiospecific Nucleic Acid Analogs

1996 ◽  
Vol 24 (2) ◽  
pp. 194-200 ◽  
Author(s):  
Vibhakar J. Shah ◽  
Irwin D. Kuntz, Jr. ◽  
George L. Kenyon
Author(s):  
Pavel Beran ◽  
Dagmar Stehlíková ◽  
Stephen P Cohen ◽  
Vladislav Čurn

Abstract Summary Searching for amino acid or nucleic acid sequences unique to one organism may be challenging depending on size of the available datasets. K-mer elimination by cross-reference (KEC) allows users to quickly and easily find unique sequences by providing target and non-target sequences. Due to its speed, it can be used for datasets of genomic size and can be run on desktop or laptop computers with modest specifications. Availability and implementation KEC is freely available for non-commercial purposes. Source code and executable binary files compiled for Linux, Mac and Windows can be downloaded from https://github.com/berybox/KEC. Supplementary information Supplementary data are available at Bioinformatics online.


Author(s):  
Ji Hye Yum ◽  
Takumi Ishizuka ◽  
Koyuki Fukumoto ◽  
Daisuke Hori ◽  
Hong-Liang Bao ◽  
...  

1991 ◽  
pp. 31-45 ◽  
Author(s):  
Kiichi Takemoto ◽  
Takehiko Wada ◽  
Eiko Mochizuki ◽  
Yoshiaki Inaki

1990 ◽  
pp. 253-267 ◽  
Author(s):  
Kiichi Takemoto ◽  
Eiko Mochizuki ◽  
Takehiko Wada ◽  
Yoshiaki Inaki

1986 ◽  
Vol 14 (1) ◽  
pp. 99-107 ◽  
Author(s):  
Hannu Peltola ◽  
Hans Söderlund ◽  
Esko Ukkonen

Molecules ◽  
2020 ◽  
Vol 25 (12) ◽  
pp. 2866 ◽  
Author(s):  
Aniket Wahane ◽  
Akaash Waghmode ◽  
Alexander Kapphahn ◽  
Karishma Dhuri ◽  
Anisha Gupta ◽  
...  

The field of gene therapy has experienced an insurgence of attention for its widespread ability to regulate gene expression by targeting genomic DNA, messenger RNA, microRNA, and short-interfering RNA for treating malignant and non-malignant disorders. Numerous nucleic acid analogs have been developed to target coding or non-coding sequences of the human genome for gene regulation. However, broader clinical applications of nucleic acid analogs have been limited due to their poor cell or organ-specific delivery. To resolve these issues, non-viral vectors based on nanoparticles, liposomes, and polyplexes have been developed to date. This review is centered on non-viral vectors mainly comprising of cationic lipids and polymers for nucleic acid-based delivery for numerous gene therapy-based applications.


2011 ◽  
Vol 2011 ◽  
pp. 1-11 ◽  
Author(s):  
Shu-ichi Nakano ◽  
Masayuki Fujii ◽  
Naoki Sugimoto

Unnatural nucleosides have been explored to expand the properties and the applications of oligonucleotides. This paper briefly summarizes nucleic acid analogs in which the base is modified or replaced by an unnatural stacking group for the study of nucleic acid interactions. We also describe the nucleoside analogs of a base pair-mimic structure that we have examined. Although the base pair-mimic nucleosides possess a simplified stacking moiety of a phenyl or naphthyl group, they can be used as a structural analog of Watson-Crick base pairs. Remarkably, they can adopt two different conformations responding to their interaction energies, and one of them is the stacking conformation of the nonpolar aromatic group causing the site-selective flipping of the opposite base in a DNA double helix. The base pair-mimic nucleosides can be used to study the mechanism responsible for the base stacking and the flipping of bases out of a nucleic acid duplex.


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