An XML Based Component Model for Generating Scientific Applications and Performing Large Scale Simulations in a Meta-computing Environment

2000 ◽  
pp. 210-224 ◽  
Author(s):  
Omer F. Rana ◽  
Maozhen Li ◽  
David W. Walker ◽  
Matthew Shields
Keyword(s):  
Large Scale ◽  
Component Model ◽  
Scientific Applications ◽  
Computing Environment ◽  
Large Scale Simulations

Automatic Partitioning of Large Scale Simulation in Grid Computing for Run Time Reduction

2010 ◽  
Vol 1 (2) ◽  
pp. 64-90 ◽  
Author(s):  
Nurcin Celik ◽  
Esfandyar Mazhari ◽  
John Canby ◽  
Omid Kazemi ◽  
Parag Sarfare ◽  
...  
Keyword(s):  
Execution Time ◽  
Large Scale ◽  
Time Synchronization ◽  
Computational Grid ◽  
Time Interval ◽  
Computational Power ◽  
Computing Environment ◽  
Large Scale Systems ◽  
Large Scale Simulations ◽  
Reduce Execution Time

Simulating large-scale systems usually entails exhaustive computational powers and lengthy execution times. The goal of this research is to reduce execution time of large-scale simulations without sacrificing their accuracy by partitioning a monolithic model into multiple pieces automatically and executing them in a distributed computing environment. While this partitioning allows us to distribute required computational power to multiple computers, it creates a new challenge of synchronizing the partitioned models. In this article, a partitioning methodology based on a modified Prim’s algorithm is proposed to minimize the overall simulation execution time considering 1) internal computation in each of the partitioned models and 2) time synchronization between them. In addition, the authors seek to find the most advantageous number of partitioned models from the monolithic model by evaluating the tradeoff between reduced computations vs. increased time synchronization requirements. In this article, epoch- based synchronization is employed to synchronize logical times of the partitioned simulations, where an appropriate time interval is determined based on the off-line simulation analyses. A computational grid framework is employed for execution of the simulations partitioned by the proposed methodology. The experimental results reveal that the proposed approach reduces simulation execution time significantly while maintaining the accuracy as compared with the monolithic simulation execution approach.

A survey of prediction-based resource scheduling techniques for physics-based scientific applications

2018 ◽  
Vol 32 (25) ◽  
pp. 1850295 ◽  
Author(s):  
Gurleen Kaur ◽  
Anju Bala
Keyword(s):  
Cloud Computing ◽  
Large Scale ◽  
Scientific Applications ◽  
Computing Environment ◽  
Cloud Computing Environment ◽  
Community Needs ◽  
Data Platform ◽  
Disciplinary Expertise ◽  
Resource Prediction ◽  
Real World Problems

The state-of-the-art physics alliances have augmented various opportunities to solve complex real-world problems. These problems require both multi-disciplinary expertise as well as large-scale computational experiments. Therefore, the physics community needs a flexible platform which can handle computational challenges such as volume of data, platform heterogeneity, application complexity, etc. Cloud computing provides an incredible amount of resources for scientific users on-demand, thus, it has become a potential platform for executing scientific applications. To manage the resources of Cloud efficiently, it is required to explore the resource prediction and scheduling techniques for scientific applications which can be deployed on Cloud. This paper discusses an extensive analysis of scientific applications, resource predictions and scheduling techniques for Cloud computing environment. Further, the trend of resource prediction-based scheduling and the existing techniques have also been studied. This paper would be helpful for the readers to explore the significance of resource prediction-based scheduling techniques for physics-based scientific applications along with the associated challenges.

An HPC Framework for Large Scale Simulations and Visualizations of Oil Spill Trajectories

2013 ◽  
Author(s):  
Jian Tao ◽  
Werner Benger ◽  
Kelin Hu ◽  
Edwin Mathews ◽  
Marcel Ritter ◽  
...  
Keyword(s):  
Oil Spill ◽  
Large Scale ◽  
Large Scale Simulations

scholarly journals Measuring sleep regularity: Theoretical properties and practical usage of existing metrics

SLEEP ◽  
2021 ◽  
Author(s):  
Dorothee Fischer ◽  
Elizabeth B Klerman ◽  
Andrew J K Phillips
Keyword(s):  
Large Scale ◽  
Research Question ◽  
Group Differences ◽  
Regularity Index ◽  
Wake Patterns ◽  
Health Related ◽  
Phase Deviation ◽  
Unbiased Estimates ◽  
Large Scale Simulations ◽  
Larger Sample

Abstract Study Objectives Sleep regularity predicts many health-related outcomes. Currently, however, there is no systematic approach to measuring sleep regularity. Traditionally, metrics have assessed deviations in sleep patterns from an individual’s average. Traditional metrics include intra-individual standard deviation (StDev), Interdaily Stability (IS), and Social Jet Lag (SJL). Two metrics were recently proposed that instead measure variability between consecutive days: Composite Phase Deviation (CPD) and Sleep Regularity Index (SRI). Using large-scale simulations, we investigated the theoretical properties of these five metrics. Methods Multiple sleep-wake patterns were systematically simulated, including variability in daily sleep timing and/or duration. Average estimates and 95% confidence intervals were calculated for six scenarios that affect measurement of sleep regularity: ‘scrambling’ the order of days; daily vs. weekly variation; naps; awakenings; ‘all-nighters’; and length of study. Results SJL measured weekly but not daily changes. Scrambling did not affect StDev or IS, but did affect CPD and SRI; these metrics, therefore, measure sleep regularity on multi-day and day-to-day timescales, respectively. StDev and CPD did not capture sleep fragmentation. IS and SRI behaved similarly in response to naps and awakenings but differed markedly for all-nighters. StDev and IS required over a week of sleep-wake data for unbiased estimates, whereas CPD and SRI required larger sample sizes to detect group differences. Conclusions Deciding which sleep regularity metric is most appropriate for a given study depends on a combination of the type of data gathered, the study length and sample size, and which aspects of sleep regularity are most pertinent to the research question.

scholarly journals Accelerating In-Transit Co-Processing for Scientific Simulations Using Region-Based Data-Driven Analysis

Algorithms ◽  
2021 ◽  
Vol 14 (5) ◽  
pp. 154
Author(s):  
Marcus Walldén ◽  
Masao Okita ◽  
Fumihiko Ino ◽  
Dimitris Drikakis ◽  
Ioannis Kokkinakis
Keyword(s):  
Large Scale ◽  
Data Driven ◽  
Data Sets ◽  
Output Constraints ◽  
Data Driven Approach ◽  
Scientific Simulations ◽  
Multiple Metrics ◽  
In Transit ◽  
Multiple Compression ◽  
Large Scale Simulations

Increasing processing capabilities and input/output constraints of supercomputers have increased the use of co-processing approaches, i.e., visualizing and analyzing data sets of simulations on the fly. We present a method that evaluates the importance of different regions of simulation data and a data-driven approach that uses the proposed method to accelerate in-transit co-processing of large-scale simulations. We use the importance metrics to simultaneously employ multiple compression methods on different data regions to accelerate the in-transit co-processing. Our approach strives to adaptively compress data on the fly and uses load balancing to counteract memory imbalances. We demonstrate the method’s efficiency through a fluid mechanics application, a Richtmyer–Meshkov instability simulation, showing how to accelerate the in-transit co-processing of simulations. The results show that the proposed method expeditiously can identify regions of interest, even when using multiple metrics. Our approach achieved a speedup of 1.29× in a lossless scenario. The data decompression time was sped up by 2× compared to using a single compression method uniformly.

scholarly journals Cloud-based intelligent self-diagnosis and department recommendation service using Chinese medical BERT

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Junshu Wang ◽  
Guoming Zhang ◽  
Wei Wang ◽  
Ka Zhang ◽  
Yehua Sheng
Keyword(s):  
Cloud Computing ◽  
Large Scale ◽  
Medical Service ◽  
Rapid Development ◽  
Medical Knowledge ◽  
Language Models ◽  
Computing Environment ◽  
Computing Power ◽  
Cloud Computing Environment ◽  
Proposed Model

AbstractWith the rapid development of hospital informatization and Internet medical service in recent years, most hospitals have launched online hospital appointment registration systems to remove patient queues and improve the efficiency of medical services. However, most of the patients lack professional medical knowledge and have no idea of how to choose department when registering. To instruct the patients to seek medical care and register effectively, we proposed CIDRS, an intelligent self-diagnosis and department recommendation framework based on Chinese medical Bidirectional Encoder Representations from Transformers (BERT) in the cloud computing environment. We also established a Chinese BERT model (CHMBERT) trained on a large-scale Chinese medical text corpus. This model was used to optimize self-diagnosis and department recommendation tasks. To solve the limited computing power of terminals, we deployed the proposed framework in a cloud computing environment based on container and micro-service technologies. Real-world medical datasets from hospitals were used in the experiments, and results showed that the proposed model was superior to the traditional deep learning models and other pre-trained language models in terms of performance.

Brain stem – from general view to computational model based on switchboard rules of operation

2019 ◽  
Vol 16 (1) ◽  
Author(s):  
Włodzisław Duch ◽  
Dariusz Mikołajewski
Keyword(s):  
Brain Stem ◽  
Large Scale ◽  
Ionic Channels ◽  
General View ◽  
The Central Nervous System ◽  
Network States ◽  
Large Scale Simulations ◽  
Influence Of Noise ◽  
The Brain ◽  
Sufficient Precision

Abstract Despite great progress in understanding the functions and structures of the central nervous system (CNS) the brain stem remains one of the least understood systems. We know that the brain stem acts as a decision station preparing the organism to act in a specific way, but such functions are rather difficult to model with sufficient precision to replicate experimental data due to the scarcity of data and complexity of large-scale simulations of brain stem structures. The approach proposed in this article retains some ideas of previous models, and provides more precise computational realization that enables qualitative interpretation of the functions played by different network states. Simulations are aimed primarily at the investigation of general switching mechanisms which may be executed in brain stem neural networks, as far as studying how the aforementioned mechanisms depend on basic neural network features: basic ionic channels, accommodation, and the influence of noise.

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