Chance-Cleland Model for Enzyme-Substrate Interaction

2001 ◽  
pp. 129-132
Author(s):  
Bruce Hannon ◽  
Matthias Ruth
Keyword(s):  
Substrate Interaction ◽  
Enzyme Substrate

scholarly journals Proteins as targets for high dilutions of drugs: Interaction between ?-amylase and mercuric chloride.

2021 ◽  
Vol 17 (2) ◽  
pp. 24-25
Author(s):  
Nirmal Chandra Sukul ◽  
Tandra Sarkar ◽  
Atheni Konar ◽  
Anirban Sukul
Keyword(s):  
Mercuric Chloride ◽  
Binding Sites ◽  
Low Dose ◽  
Soluble Starch ◽  
Low Doses ◽  
Substrate Interaction ◽  
Enzyme Substrate ◽  
High Dilutions ◽  
High Doses ◽  
Mother Tincture

Background: High dilutions of drugs, used in homeopathy, are usually applied by oral route or foliar spray. These dilutions first come in contact with membrane or circulating proteins. Ultra low doses of mercuric chloride, called potencies, promote activity of diastase or ?-amylase in terms of breakdown of starch, a polysaccharide into a disaccharide maltose in a cell-free medium in test tubes. Merc cor or HgCl2 in high doses inhibits the enzyme activity. Aims: To see (i) whether the high and ultra low dose effects of HgCl2 involve different binding sites of the enzyme and (ii) to find an explanation for the low dose effect of HgCl2 in spite of absence of its original molecules. Methodology: Merc cor mother tincture (147 mM HgCl2) in distilled water was used undiluted in this experiment. Merc cor 200c and 1000c were prepared from the mother tincture (MT) by successive dilution with water 1:100 followed by succussion in 200 and 1000 steps, respectively, and finally preserved in 90% EtOH. These potencies and blank 90% ethanol, were diluted with deionized, distilled (DD) water 1:1000 to minimize ethanol content in test solutions. Each test solution or control was mixed with the enzyme 1:10 just before experiment. The control consisted of DD water. An isothermal calorimetry (ITC) instrument was used to measure the interaction between soluble starch and ?-amylase mixed with each potency (200c/1000c) of Merc cor, its mother tincture, ethanol and control. ITC is a thermodynamic technique which helps in measuring directly very small amount of heat evolved during chemical reaction. Soluble starch 90 µM was injected into 300 µl of 15µM ?-amylase at 2 µl / injection. Twenty injections, one every 2 min, were given. The enzyme substrate interaction in terms of heat released (exothermic) or absorbed (endothermic) were monitored by the ITC instrument. All ITC measurements were calculated and analyzed statistically by an in-built software Origin 7. Results and discussion: The data are presented in figures. While Merc cor MT shows endothermic reaction, all its potencies, ethanol and water control show exothermic reactions. There is wide variation in enthalpy (?H), entropy (?S), binding constant (K) and Gibbs free energy change (?G) among the treatments with Merc cor MT, potencies, ethanol and also control. The results indicate that Merc cor MT and its potencies act on different binding sites of the enzyme. The variation in thermodynamic parameters suggest difference in binding interaction between the drug solutions and the enzyme. This in turn influences the enzyme substrate interaction as reported in earlier studies. The potencies are virtually water modified by the starting substance HgCl2. Conclusion: The mother tincture and potencies of mercuric chloride produce different effects on the enzyme substrate interaction. Potencies show wide variation in ?H, ?S, K and ?G values. It appears from the results that the drugs used in homeopathy produce dual action on proteins. At high doses they act on a binding site(s) but at ultra low doses they act on a different binding site(s). Proteins in an organism may serve as targets for initiation of action of homeopathic potencies.

scholarly journals Formation of compound I by the reaction of catalase with peroxoacetic acid

1972 ◽  
Vol 130 (2) ◽  
pp. 411-415 ◽  
Author(s):  
Peter Jones ◽  
D. N. Middlemiss
Keyword(s):  
Compound I ◽  
Considerable Potential ◽  
Substrate Interaction ◽  
Enzyme Substrate ◽  
Alkyl Hydroperoxides

1. The formation of Compound I by the reactions of bacterial and ox liver catalases with peroxoacetic acid was examined. In both cases the process occurs almost entirely by reaction of catalase with un-ionized peroxoacetic acid molecules. The result suggests an important role for the bound peroxidic proton in the enzyme–substrate interaction. 2. The peroxidatic properties of the Compounds I formed when peroxoacetic acid was used were examined by studying the oxidations of ethanol and formate; the results closely resemble those previously reported when H2O2 and alkyl hydroperoxides were used. 3. Compound I formed with bacterial catalase and peroxoacetic acid is remarkably stable in the absence of added donor and the preparation has considerable potential for detailed studies of the nature of this intermediate.

Steps in the reactions of proteolytic enzymes with their substrates

1970 ◽  
Vol 257 (813) ◽  
pp. 105-110 ◽  
Keyword(s):  
Active Sites ◽  
Dissociation Constants ◽  
Proteolytic Enzymes ◽  
Substrate Binding ◽  
Hydrolytic Enzymes ◽  
Dimensional Structure ◽  
Chemical Information ◽  
Substrate Interaction ◽  
Enzyme Substrate ◽  
Wide Range

Kinetic experiments should be designed to answer specific questions about a reaction mechanism. The present paper is intended to show how a number of specific questions have been answered. Chymotrypsin and trypsin are mainly used to illustrate the different approaches, but many of the arguments used are equally applicable to the reactions of other hydrolytic enzymes with serine-OH or cysteine-SH at the active site. T he recognition of serine-OH and cysteine-SH as essential groups at the active sites of different hydrolytic enzymes did not rest on kinetic evidence. This was deduced from the correlation of enzyme activity with the extent of modification of specially reactive groups. The investigation of proton dissociation equilibria and the assignment of dissociation constants to groups with specified functions in substrate binding, catalysis or protein conformation was the first objective of serious kinetic studies of enzyme reactions. Steady state rate measurements over a wide range of pH showed that groups with p K 6.25 and 6.85 respectively are involved in the catalytic activity of trypsin and chymotrypsin with certain specific substrates (Hammond & Gutfreund 1955). In the case of chymotrypsin it was also shown by Hammond & Gutfreund (1955) that a group with a more alkaline pK is involved in substrate binding. This latter group was subsequently identified and its function was elucidated through the elegant experiments of Oppenheimer, Labouresse & Hess (1966). The identification of histidine as the group with p K A near neutrality, involved in the catalytic mechanism of trypsin and chymotrypsin, was subsequently confirmed by direct chemical methods by Schoelmann & Shaw (1963). Only kinetic analysis can demonstrate the involvement of proton donors or acceptors with specific properties in enzyme-substrate interaction or in catalysis. The clear identification of chemical groups capable of performing such functions is coming from the crystallographic analysis of the three-dimensional structure at the site of enzyme-substrate interaction, as illustrated in other papers presented in this discussion. Very interesting chemical information is obtained when the effect of structure on reactivity is synthesized from the composite of crystallographic and kinetic data.

scholarly journals Synthesis and oxidation of aminoalkyl-onium compounds by pig kidney diamine oxidase

1971 ◽  
Vol 122 (4) ◽  
pp. 557-567 ◽  
Author(s):  
W. G. Bardsley ◽  
J. S. Ashford ◽  
C. M. Hill
Keyword(s):  
Substrate Concentration ◽  
Diamine Oxidase ◽  
Amino Group ◽  
High Substrate Concentration ◽  
High Substrate ◽  
Pig Kidney ◽  
Substrate Interaction ◽  
Enzyme Substrate ◽  
Potent Inhibition

1. The preparation of a series of compounds derived from diamines by replacing one amino group by a dimethylsulphonium, isothiuronium, trimethylammonium, NN′-dimethylimidazolium or N-methylpyridinium species is described. 2. The behaviour of these compounds as substrates of pig kidney diamine oxidase is reported. All but the trimethylammonium compounds proved to be substrates. 3. Many of these compounds showed potent inhibition at high substrate concentration and this was studied. 4. On the basis of these and other observations a scheme for enzyme–substrate interaction is suggested.

Endo- and exo-inulinases: Enzyme-substrate interaction and rational immobilization

2009 ◽  
pp. NA-NA ◽  
Author(s):  
Alessandra Basso ◽  
Patrizia Spizzo ◽  
Valerio Ferrario ◽  
Lorena Knapic ◽  
Nina Savko ◽  
...  
Keyword(s):  
Substrate Interaction ◽  
Enzyme Substrate
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