MicroRNA Sequencing Data Analysis Toolkits

Author(s):  
Wei Wu
Genomics ◽  
2017 ◽  
Vol 109 (2) ◽  
pp. 83-90 ◽  
Author(s):  
Yan Guo ◽  
Yulin Dai ◽  
Hui Yu ◽  
Shilin Zhao ◽  
David C. Samuels ◽  
...  

2017 ◽  
Vol 20 (1) ◽  
pp. 222-234 ◽  
Author(s):  
Saira Afzal ◽  
Irene Gil-Farina ◽  
Richard Gabriel ◽  
Shahzad Ahmad ◽  
Christof von Kalle ◽  
...  

2020 ◽  
Vol 200 ◽  
pp. 108204 ◽  
Author(s):  
Andrew P. Voigt ◽  
S. Scott Whitmore ◽  
Nicholas D. Lessing ◽  
Adam P. DeLuca ◽  
Budd A. Tucker ◽  
...  

2020 ◽  
Vol 21 (18) ◽  
pp. 6950
Author(s):  
Anastasiya V. Snezhkina ◽  
Dmitry V. Kalinin ◽  
Vladislav S. Pavlov ◽  
Elena N. Lukyanova ◽  
Alexander L. Golovyuk ◽  
...  

Carotid paragangliomas (CPGLs) are rare neuroendocrine tumors often associated with mutations in SDHx genes. The immunohistochemistry of succinate dehydrogenase (SDH) subunits has been considered a useful instrument for the prediction of SDHx mutations in paragangliomas/pheochromocytomas. We compared the mutation status of SDHx genes with the immunohistochemical (IHC) staining of SDH subunits in CPGLs. To identify pathogenic/likely pathogenic variants in SDHx genes, exome sequencing data analysis among 42 CPGL patients was performed. IHC staining of SDH subunits was carried out for all CPGLs studied. We encountered SDHx variants in 38% (16/42) of the cases in SDHx genes. IHC showed negative (5/15) or weak diffuse (10/15) SDHB staining in most tumors with variants in any of SDHx (94%, 15/16). In SDHA-mutated CPGL, SDHA expression was completely absent and weak diffuse SDHB staining was detected. Positive immunoreactivity for all SDH subunits was found in one case with a variant in SDHD. Notably, CPGL samples without variants in SDHx also demonstrated negative (2/11) or weak diffuse (9/11) SDHB staining (42%, 11/26). Obtained results indicate that SDH immunohistochemistry does not fully reflect the presence of mutations in the genes; diagnostic effectiveness of this method was 71%. However, given the high sensitivity of SDHB immunohistochemistry, it could be used for initial identifications of patients potentially carrying SDHx mutations for recommendation of genetic testing.


2016 ◽  
Vol 37 (12) ◽  
pp. 1283-1298 ◽  
Author(s):  
Dario Veneziano ◽  
Sebastiano Di Bella ◽  
Giovanni Nigita ◽  
Alessandro Laganà ◽  
Afredo Ferro ◽  
...  

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