TertProt: A Protein Fold Recognition Method Using Protein Secondary Structure Program

Advances in Intelligent and Soft Computing - Proceedings of the International Conference on Information Systems Design and Intelligent Applications 2012 (INDIA 2012) held in Visakhapatnam, India, January 2012 ◽

10.1007/978-3-642-27443-5_19 ◽

2012 ◽

pp. 161-168

Author(s):

D. S. V. G. K. Kaladhar

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

Fold Recognition ◽

Protein Fold ◽

Recognition Method ◽

Structure Program ◽

Protein Fold Recognition ◽

Fold Recognition Method

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Assessment of a protein fold recognition method that takes into account four physicochemical properties: Side-chain packing, solvation, hydrogen-bonding, and local conformation

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340230310 ◽

1995 ◽

Vol 23 (3) ◽

pp. 370-375 ◽

Author(s):

Yo Matsuo ◽

Ken Nishikawa

Keyword(s):

Hydrogen Bonding ◽

Physicochemical Properties ◽

Fold Recognition ◽

Protein Fold ◽

Recognition Method ◽

Chain Packing ◽

Protein Fold Recognition ◽

Local Conformation ◽

Fold Recognition Method

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GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

Journal of Molecular Biology ◽

10.1006/jmbi.1999.2583 ◽

1999 ◽

Vol 287 (4) ◽

pp. 797-815 ◽

Author(s):

David T. Jones

Keyword(s):

Fold Recognition ◽

Genomic Sequences ◽

Protein Fold ◽

Recognition Method ◽

Protein Fold Recognition ◽

Fold Recognition Method

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A 9-state hidden Markov model using protein secondary structure information for protein fold recognition

Computers in Biology and Medicine ◽

10.1016/j.compbiomed.2009.03.008 ◽

2009 ◽

Vol 39 (6) ◽

pp. 527-534 ◽

Author(s):

Sun Young Lee ◽

Jong Yun Lee ◽

Kwang Su Jung ◽

Keun Ho Ryu

Keyword(s):

Secondary Structure ◽

Markov Model ◽

Hidden Markov Model ◽

Hidden Markov ◽

Protein Secondary Structure ◽

Fold Recognition ◽

Protein Fold ◽

Secondary Structure Information ◽

Structure Information ◽

Protein Fold Recognition

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A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

Journal of Molecular Biology ◽

10.1006/jmbi.1997.0924 ◽

1997 ◽

Vol 267 (4) ◽

pp. 1026-1038 ◽

Author(s):

Danny W. Rice ◽

David Eisenberg

Keyword(s):

Secondary Structure ◽

Fold Recognition ◽

Substitution Matrix ◽

Protein Fold ◽

Protein Fold Recognition

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Structural protein fold recognition based on secondary structure and evolutionary information using machine learning algorithms

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2021.107456 ◽

2021 ◽

Vol 91 ◽

pp. 107456

Author(s):

Xinyi Qin ◽

Min Liu ◽

Lu Zhang ◽

Guangzhong Liu

Keyword(s):

Machine Learning ◽

Secondary Structure ◽

Learning Algorithms ◽

Fold Recognition ◽

Machine Learning Algorithms ◽

Evolutionary Information ◽

Protein Fold ◽

Structural Protein ◽

Protein Fold Recognition

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Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure

2007 IEEE International Conference on Acoustics, Speech and Signal Processing - ICASSP '07 ◽

10.1109/icassp.2007.366688 ◽

2007 ◽

Author(s):

Zafer Aydin ◽

Hakan Erdogan ◽

Yucel Altunbasak

Keyword(s):

Secondary Structure ◽

Fold Recognition ◽

Protein Fold ◽

Protein Fold Recognition

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Enhanced protein fold recognition using secondary structure information from nmr

Protein Science ◽

10.1110/ps.8.5.1127 ◽

1999 ◽

Vol 8 (5) ◽

pp. 1127-1133 ◽

Author(s):

Daniel J. Ayers ◽

Paul R. Gooley ◽

Asaph Widmer-Cooper ◽

Andrew E. Torda

Keyword(s):

Secondary Structure ◽

Fold Recognition ◽

Protein Fold ◽

Secondary Structure Information ◽

Structure Information ◽

Protein Fold Recognition

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MANIFOLD: protein fold recognition based on secondary structure, sequence similarity and enzyme classification

Protein Engineering Design and Selection ◽

10.1093/protein/gzg106 ◽

2003 ◽

Vol 16 (11) ◽

pp. 785-789 ◽

Author(s):

E. Bindewald ◽

A. Cestaro ◽

J. Hesser ◽

M. Heiler ◽

S. C.E. Tosatto

Keyword(s):

Secondary Structure ◽

Sequence Similarity ◽

Fold Recognition ◽

Protein Fold ◽

Enzyme Classification ◽

Protein Fold Recognition

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Protein fold recognition from secondary structure assignments

Proceedings of the Twenty-Eighth Hawaii International Conference on System Sciences, vol.5 ◽

10.1109/hicss.1995.375326 ◽

2002 ◽

Author(s):

R.B. Russell ◽

R.R. Copley ◽

G.J. Barton

Keyword(s):

Secondary Structure ◽

Fold Recognition ◽

Protein Fold ◽

Protein Fold Recognition

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ASFold-DNN: Protein Fold Recognition based on Evolutionary Features with Variable Parameters using Full Connected Neural Network

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2021.3089168 ◽

2021 ◽

pp. 1-1

Author(s):

Xinyi Qin ◽

Lu Zhang ◽

in Liu ◽

Ziwei Xu ◽

Guangzhong Liu

Keyword(s):

Neural Network ◽

Fold Recognition ◽

Protein Fold ◽

Variable Parameters ◽

Protein Fold Recognition ◽

Evolutionary Features

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