Mechanical Stirring Induces Hetero-double-helix Formation and Self-assembly of Pseudoenantiomeric Oxymethylenehelicene Oligomers in Solution

Author(s):  
Tsukasa Sawato
2021 ◽  
Vol 54 ◽  
Author(s):  
Björn Lindman ◽  
Bruno Medronho ◽  
Luís Alves ◽  
Magnus Norgren ◽  
Lars Nordenskiöld

Abstract Desoxyribosenucleic acid, DNA, and cellulose molecules self-assemble in aqueous systems. This aggregation is the basis of the important functions of these biological macromolecules. Both DNA and cellulose have significant polar and nonpolar parts and there is a delicate balance between hydrophilic and hydrophobic interactions. The hydrophilic interactions related to net charges have been thoroughly studied and are well understood. On the other hand, the detailed roles of hydrogen bonding and hydrophobic interactions have remained controversial. It is found that the contributions of hydrophobic interactions in driving important processes, like the double-helix formation of DNA and the aqueous dissolution of cellulose, are dominating whereas the net contribution from hydrogen bonding is small. In reviewing the roles of different interactions for DNA and cellulose it is useful to compare with the self-assembly features of surfactants, the simplest case of amphiphilic molecules. Pertinent information on the amphiphilic character of cellulose and DNA can be obtained from the association with surfactants, as well as on modifying the hydrophobic interactions by additives.


2004 ◽  
Vol 69 (4) ◽  
pp. 715-747 ◽  
Author(s):  
Miroslav Fojta

This review is devoted to applications of mercury electrodes in the electrochemical analysis of nucleic acids and in studies of DNA structure and interactions. At the mercury electrodes, nucleic acids yield faradaic signals due to redox processes involving adenine, cytosine and guanine residues, and tensammetric signals due to adsorption/desorption of polynucleotide chains at the electrode surface. Some of these signals are highly sensitive to DNA structure, providing information about conformation changes of the DNA double helix, formation of DNA strand breaks as well as covalent or non-covalent DNA interactions with small molecules (including genotoxic agents, drugs, etc.). Measurements at mercury electrodes allow for determination of small quantities of unmodified or electrochemically labeled nucleic acids. DNA-modified mercury electrodes have been used as biodetectors for DNA damaging agents or as detection electrodes in DNA hybridization assays. Mercury film and solid amalgam electrodes possess similar features in the nucleic acid analysis to mercury drop electrodes. On the contrary, intrinsic (label-free) DNA electrochemical responses at other (non-mercury) solid electrodes cannot provide information about small changes of the DNA structure. A review with 188 references.


2020 ◽  
Vol 132 (19) ◽  
pp. 7695-7695
Author(s):  
Akio Urushima ◽  
Daisuke Taura ◽  
Makoto Tanaka ◽  
Naomichi Horimoto ◽  
Junki Tanabe ◽  
...  

1985 ◽  
Vol 13 (13) ◽  
pp. 4811-4824 ◽  
Author(s):  
Fareed Aboul-ela ◽  
David Koh ◽  
Ignacio Tinoco ◽  
Francis H. Martin
Keyword(s):  

2020 ◽  
Vol 11 (12) ◽  
pp. 3290-3300 ◽  
Author(s):  
Tsukasa Sawato ◽  
Rina Iwamoto ◽  
Masahiko Yamaguchi

1 : 1 mixtures of aminomethylenehelicene (P)-tetramer and (M)-pentamer with terminal C16 alkyl groups in fluorobenzene showed structural changes between hetero-double-helices B and C and random-coils 2A.


2009 ◽  
Vol 131 (13) ◽  
pp. 4710-4719 ◽  
Author(s):  
Hidetoshi Goto ◽  
Yoshio Furusho ◽  
Kazuhiro Miwa ◽  
Eiji Yashima
Keyword(s):  

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