scholarly journals QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus

2021 ◽  
Author(s):  
Yinbo Ma ◽  
Sushil Satish Chhapekar ◽  
Lu Lu ◽  
Xiaona Yu ◽  
Seungho Kim ◽  
...  
Keyword(s):  
Qtl Mapping ◽  
Fusarium Wilt ◽  
Raphanus Sativus ◽  
Functional Genes ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Wilt Resistance ◽  
Whole Genome Resequencing ◽  
Fusarium Wilt Resistance

scholarly journals Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

2021 ◽  
Author(s):  
Huang Li ◽  
Xiao Hu ◽  
John T. Lovell ◽  
Paul P. Grabowski ◽  
Sujan Mamidi ◽  
...  
Keyword(s):  
Qtl Mapping ◽  
Natural Variation ◽  
Whole Genome ◽  
Genetic Dissection ◽  
Genome Resequencing ◽  
Whole Genome Resequencing

scholarly journals Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Rachit K. Saxena ◽  
Vikas K. Singh ◽  
Sandip M. Kale ◽  
Revathi Tathineni ◽  
Swathi Parupalli ◽  
...  
Keyword(s):  
Qtl Mapping ◽  
Fusarium Wilt ◽  
Genotyping By Sequencing ◽  
High Density ◽  
Genetic Maps ◽  
Wilt Resistance ◽  
Fusarium Wilt Resistance

scholarly journals QTL mapping of quality traits in peanut using whole-genome resequencing

2021 ◽  
Author(s):  
Ziqi Sun ◽  
Feiyan Qi ◽  
Hua Liu ◽  
Li Qin ◽  
Jing Xu ◽  
...  
Keyword(s):  
Qtl Mapping ◽  
Whole Genome ◽  
Quality Traits ◽  
Genome Resequencing ◽  
Whole Genome Resequencing

scholarly journals QTL Mapping for Leaf Area of Tea Plants (Camellia sinensis) Based on a High-Quality Genetic Map Constructed by Whole Genome Resequencing

2021 ◽  
Vol 12 ◽  
Author(s):  
Yanlin An ◽  
Linbo Chen ◽  
Lingling Tao ◽  
Shengrui Liu ◽  
Chaoling Wei
Keyword(s):  
Qtl Mapping ◽  
Leaf Area ◽  
Genetic Map ◽  
Tea Plant ◽  
Whole Genome ◽  
Genome Resequencing ◽  
High Quality ◽  
F1 Hybrid ◽  
Small Leaf ◽  
Whole Genome Resequencing

High-quality genetic maps play important roles in QTL mapping and molecular marker-assisted breeding. Tea leaves are not only important vegetative organs but are also the organ for harvest with important economic value. However, the key genes and genetic mechanism of regulating leaf area have not been clarified. In this study, we performed whole-genome resequencing on “Jinxuan,” “Yuncha 1” and their 96 F1 hybrid offspring. From the 1.84 Tb of original sequencing data, abundant genetic variation loci were identified, including 28,144,625 SNPs and 2,780,380 indels. By integrating the markers of a previously reported genetic map, a high-density genetic map consisting of 15 linkage groups including 8,956 high-quality SNPs was constructed. The total length of the genetic map is 1,490.81 cM, which shows good collinearity with the genome. A total of 25 representative markers (potential QTLs) related to leaf area were identified, and there were genes differentially expressed in large and small leaf samples near these markers. GWAS analysis further verified the reliability of QTL mapping. Thirty-one pairs of newly developed indel markers located near these potential QTLs showed high polymorphism and had good discrimination between large and small leaf tea plant samples. Our research will provide necessary support and new insights for tea plant genetic breeding, quantitative trait mapping and yield improvement.

Whole genome resequencing reveals novel loci associated with bacterial wilt resistance in tomato

2021 ◽  
pp. 49-52
Author(s):  
D.W. Barchenger ◽  
J.Y. Ou ◽  
Y.C. Lin ◽  
Y.C. Hsu ◽  
S.F. Lu ◽  
...  
Keyword(s):  
Bacterial Wilt ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Wilt Resistance ◽  
Bacterial Wilt Resistance ◽  
Whole Genome Resequencing

Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing

2014 ◽  
Vol 128 (2) ◽  
pp. 259-272 ◽  
Author(s):  
Jeong-Hwan Mun ◽  
Hee Chung ◽  
Won-Hyong Chung ◽  
Mijin Oh ◽  
Young-Min Jeong ◽  
...  
Keyword(s):  
Genetic Map ◽  
Raphanus Sativus ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Whole Genome Resequencing

Radish germplasm with fusarium wilt-resistance as material for breeding disease-resistant varieties

2017 ◽  
Author(s):  
YA Jeon ◽  
JH Rhee ◽  
JS Sung ◽  
HJ Baek ◽  
OS Hur ◽  
...  
Keyword(s):  
Fusarium Wilt ◽  
Wilt Resistance ◽  
Disease Resistant ◽  
Resistant Varieties ◽  
Fusarium Wilt Resistance

Genetic diversity and population structure of Tibetan sheep breeds determined by whole genome resequencing

2021 ◽  
Vol 53 (1) ◽  
Author(s):  
Lei-Lei Li ◽  
Shi-Ke Ma ◽  
Wei Peng ◽  
You-Gui Fang ◽  
Hai-Rui Duo ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Sheep Breeds ◽  
Tibetan Sheep ◽  
Whole Genome Resequencing
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