Computational insight into protein circular dichroism: detailed analysis of contributions of individual chromophores in TEM-1 β-lactamase

2010 ◽  
Vol 128 (1) ◽  
pp. 25-37 ◽  
Author(s):  
Christo Christov ◽  
Tatyana Karabencheva
2019 ◽  
Vol 21 (7) ◽  
pp. 3574-3584 ◽  
Author(s):  
Angelo Shehan Perera ◽  
Joseph Cheramy ◽  
Mohammad Reza Poopari ◽  
Yunjie Xu

Crucial insight into lactic acid self-aggregation in solution is obtained by following its unique VCD spectral features in cold matrices.


2018 ◽  
Vol 20 (7) ◽  
pp. 4926-4935 ◽  
Author(s):  
Jiří Kessler ◽  
Valery Andrushchenko ◽  
Josef Kapitán ◽  
Petr Bouř

Fragment-based density-functional simulations allow us to better interpret protein vibrational circular dichroism spectra and relate them to fine structural variations.


2017 ◽  
Vol 8 (2) ◽  
pp. 1369-1377 ◽  
Author(s):  
Tessa M. Baker ◽  
Toshiki G. Nakashige ◽  
Elizabeth M. Nolan ◽  
Michael L. Neidig

Magnetic circular dichroism studies of Fe(ii) binding to human calprotectin demonstrate the nature of Fe(ii) coordination at two different Fe(ii)-binding sites and provide insight into how Ca(ii) modulates Fe(ii) coordination.


Symmetry ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 1752
Author(s):  
Giuseppe Mazzeo ◽  
Sergio Abbate ◽  
Stefan E. Boiadjiev ◽  
David A. Lightner ◽  
Giovanna Longhi

Bicyclo[3.3.1]nonane-2,6-dione (1) and bicyclo[3.3.1]nona-3,7-diene-2,6-dione (2) have been examined by vibrational circular dichroism (VCD), which, as for most C2-symmetric systems, exhibits strong VCD signals. In the case of 2, VCD signals are stronger and sharper with several bisignate doublets; for 1, signals are less intense and broader. The VCD and IR spectra are excellently predicted by DFT calculations: only one conformer is present for 2, while for 1, three main conformers, related through concerted skeleton torsional motions are present (two of them being interchanged by C2-rotation). The VCD spectrum shows specific features for the different conformers, such that correct population factors are crucial for reproducing experimental data. Also, the TD-DFT prediction of ECD (electronic circular dichroism) spectra is good. By comparing the spectroscopic signature of the two molecules (both VCD and ECD) and by careful analysis of the theoretical results, the role of the C=C double bond in compound (2) is evidenced. The double bond contributes toward enhancing the CD response both electronically and vibrationally.


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