scholarly journals Environmental Filtering Process Has More Important Roles than Dispersal Limitation in Shaping Large-Scale Prokaryotic Beta Diversity Patterns of Grassland Soils

2016 ◽  
Vol 72 (1) ◽  
pp. 221-230 ◽  
Author(s):  
Peng Cao ◽  
Jun-Tao Wang ◽  
Hang-Wei Hu ◽  
Yuan-Ming Zheng ◽  
Yuan Ge ◽  
...  
Author(s):  
Victor Noguerales ◽  
Emmanouil Meramveliotakis ◽  
Adrián Castro-Insua ◽  
Carmelo Andujar ◽  
Paula Arribas ◽  
...  

Disentangling the relative role of environmental filtering and dispersal limitation in driving metacommunity structure across mountainous regions remains challenging, as the way we quantify spatial connectivity in topographically and environmentally heterogeneous landscapes can influence our perception of which process predominates. More empirical datasets are required to account for taxon- and context-dependency but relevant research is often compromised by coarse taxonomic resolution. We here employed haplotype-level community DNA metabarcoding, enabled by stringent filtering of Amplicon Sequence Variants (ASVs), to characterize metacommunity structure of soil microarthropod assemblages across a mosaic of five forest habitats on the Troodos mountain range in Cyprus. We found similar β diversity patterns at ASV and species (OTU, Operational Taxonomic Unit) levels, which pointed to a primary role of habitat filtering resulting in the existence of largely distinct metacommunities linked to different forest types. Within-habitat turnover was correlated to topoclimatic heterogeneity, again emphasizing the role of environmental filtering. However, when integrating landscape matrix information for the highly fragmented Golden Oak habitat, we also detected a major role of dispersal limitation imposed by patch connectivity, indicating that stochastic and niche-based processes synergistically govern community assembly. Alpha diversity patterns varied between ASV and OTU levels, with OTU richness decreasing with elevation and ASV richness following a longitudinal gradient, potentially reflecting a decline of genetic diversity eastwards due to historical pressures. Our study demonstrates the utility of haplotype-level community metabarcoding for characterising metacommunity structure of complex assemblages and improving our understanding of biodiversity dynamics across mountainous landscapes worldwide.


2021 ◽  
Vol 9 ◽  
Author(s):  
Joseph P. Wayman ◽  
Jonathan P. Sadler ◽  
Thomas A. M. Pugh ◽  
Thomas E. Martin ◽  
Joseph A. Tobias ◽  
...  

Spatial variation in community composition may be driven by a variety of processes, including environmental filtering and dispersal limitation. While work has been conducted on the relative importance of these processes on various taxa and at varying resolutions, tests using high-resolution empirical data across large spatial extents are sparse. Here, we use a dataset on the presence/absence of breeding bird species collected at the 10 km × 10 km scale across the whole of Britain. Pairwise spatial taxonomic and functional beta diversity, and the constituent components of each (turnover and nestedness/richness loss or gain), were calculated alongside two other measures of functional change (mean nearest taxon distance and mean pairwise distance). Predictor variables included climate and land use measures, as well as a measure of elevation, human influence, and habitat diversity. Generalized dissimilarity modeling was used to analyze the contribution of each predictor variable to variation in the different beta diversity metrics. Overall, we found that there was a moderate and unique proportion of the variance explained by geographical distance per se, which could highlight the role of dispersal limitation in community dissimilarity. Climate, land use, and human influence all also contributed to the observed patterns, but a large proportion of the explained variance in beta diversity was shared between these variables and geographical distance. However, both taxonomic nestedness and functional nestedness were uniquely predicted by a combination of land use, human influence, elevation, and climate variables, indicating a key role for environmental filtering. These findings may have important conservation implications in the face of a warming climate and future land use change.


2015 ◽  
Vol 17 (2) ◽  
pp. 96-106 ◽  
Author(s):  
Anita Stival dos Santos ◽  
Daniel Dutra Saraiva ◽  
Sandra Cristina Müller ◽  
Gerhard Ernst Overbeck

Author(s):  
Rui Xing ◽  
Qing-bo Gao ◽  
Fa-qi Zhang ◽  
Jiu-li Wang ◽  
Shi-long Chen

Abstract The Qaidam Basin is the most extensive (120,000 km2) basin on the Qinghai-Tibet Plataea (QTP). Recent studies have shown that environmental selection and dispersal limitation influence the soil fungal community significantly in a large-scale distance. However, less is known about large-scale soil fungal community assemblages and its response to the elevation gradient in the high-elevation basin ecosystems. We studied fungal assemblages using Illumina sequencing of the ITS1 region from 35 sites of the Qaidam Basin. As the increase of elevation, fungal species richness and Chao1 index also increased. The Ascomycota was the most abundant phylum (more than 70% of total sequences), and six of the ten most abundance fungal family was detected in all 35 soil samples. The key factors influencing the soil fungal community composition in the Qaidam Basin were environmental filtering (soil properties and climate factors). The Mantel test showed no significant relationship between geographic distance and community similarity (r = 0.05 p = 0.81). The absence of the distance effect might be caused by lacking dispersal limitation for the soil fungal community.


Author(s):  
Victor Noguerales ◽  
Emmanouil Meramveliotakis ◽  
Adrián Castro-Insua ◽  
Carmelo Andujar ◽  
Paula Arribas ◽  
...  

Disentangling the relative role of environmental filtering and dispersal limitation in driving metacommunity structure across mountainous regions remains challenging, as the way we quantify spatial connectivity in topographically and environmentally heterogeneous landscapes can influence our perception of which process predominates. More empirical datasets are required to account for taxon- and context-dependency but relevant research is often compromised by coarse taxonomic resolution. We here employed haplotype-level community DNA metabarcoding, enabled by stringent filtering of Amplicon Sequence Variants (ASVs), to characterize metacommunity structure of soil microarthropod assemblages across a mosaic of five forest habitats on the Troodos mountain range in Cyprus. We found similar β diversity patterns at ASV and species (OTU, Operational Taxonomic Unit) levels, which pointed to a primary role of habitat filtering resulting in the existence of largely distinct metacommunities linked to different forest types. Within-habitat turnover was correlated to topoclimatic heterogeneity, again emphasizing the role of environmental filtering. However, when integrating landscape matrix information for the highly fragmented Golden Oak habitat, we also detected a major role of dispersal limitation imposed by patch connectivity, indicating that stochastic and niche-based processes synergistically govern community assembly. Alpha diversity patterns varied between ASV and OTU levels, with OTU richness decreasing with elevation and ASV richness following a longitudinal gradient, potentially reflecting a decline of genetic diversity eastwards due to historical pressures. Our study demonstrates the utility of haplotype-level community metabarcoding for characterising metacommunity structure of complex assemblages and improving our understanding of biodiversity dynamics across mountainous landscapes worldwide.


2021 ◽  
Vol 25 (02) ◽  
pp. 398-414
Author(s):  
Naraiana Loureiro Benone ◽  
◽  
Luciano Fogaça de Assis Montag ◽  

Species diversity is defined as the variety of species and their relative abundances, and can be decomposed in local (alpha), regional (gamma) and between-communities (beta) diversity. For decades, studies with Brazilian stream fish focused on the relationship between local environmental variables and diversity patterns. However, dispersal gained notoriety for being important to the organization of communities. Besides, large scale variables are increasingly being perceived as good predictors of diversity, complementing the role of habitat variables. We present here a brief review of the methods to obtain alpha and beta taxonomic diversity, considerations regarding their predictors, and their main analysis.


2020 ◽  
Author(s):  
Guillaume Lentendu ◽  
Micah Dunthorn

AbstractWe used two large-scale metabarcoding datasets to evaluate phylogenetic signals at global marine and regional terrestrial scales using co-occurrence and co-exclusion networks. Phylogenetic relatedness was estimated using either global pairwise sequence distance or phylogenetic distance and the significance of observed patterns relating networks and phylogenies were evaluated against two null models. In all datasets, we found that phylogenetically close OTUs significantly co-occurred more often, and OTUs with intermediate phylogenetic relatedness co-occurred less often, than expected by chance. Phylogenetically close OTUs co-excluded less often than expected by chance in the marine datasets only. Simultaneous excess of co-occurrences and co-exclusions were observed in the inversion zone between close and intermediate phylogenetic distance classes in marine surface. Similar patterns were observed by using either pairwise sequence or phylogenetic distances, and by using both null models. These results suggest that environmental filtering and dispersal limitation are the preponderant forces driving co-occurrence of protists in both environments, while signal of competitive exclusion was only detected in the marine surface environment. The discrepancy in the co-exclusion pattern is potentially linked to the individual environments: water bodies are more homogeneous while tropical forest soils contain a myriad of nutrient rich micro-environment reducing the strength of mutual exclusion.


PLoS ONE ◽  
2021 ◽  
Vol 16 (1) ◽  
pp. e0245249
Author(s):  
Lamei Jiang ◽  
Guanghui Lv ◽  
Yanming Gong ◽  
Yan Li ◽  
Hengfang Wang ◽  
...  

Species dissimilarity (beta diversity) primarily reflects the spatio–temporal changes in the species composition of a plant community. The correlations between β diversity and environmental factors and spatial distance can be used to explain the magnitudes of environmental filtering and dispersal. However, little is known about the relative roles and importance of neutral and niche-related factors in the assemblage of plant communities with different life forms in deserts. We found that in desert ecosystems, the β diversity of herbaceous plants was the highest, followed by that of shrubs and trees. The changes in the β diversity of herbs and shrubs had stronger correlations with the environment, indicating that community aggregation was strongly affected by niche processes. The soil water content and salt content were the key environmental factors affecting species distributions of the herb and shrub layers, respectively. Spatial distance explained a larger amount of the variation in tree composition, indicating that dispersal limitation was the main factor affecting the construction of the tree layer community. The results suggest that different life forms may determine the association between organisms and the environment. These findings suggest that the spatial patterns of plant community species in the Ebinur Lake desert ecosystem are the result of the combined effects of environmental filtering and dispersal limitation.


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