scholarly journals Virtual Liver Resection and Volumetric Analysis of the Future Liver Remnant using Open Source Image Processing Software

2010 ◽  
Vol 34 (10) ◽  
pp. 2426-2433 ◽  
Author(s):  
Joost R. van der Vorst ◽  
Ronald M. van Dam ◽  
Rogier S. A. van Stiphout ◽  
Maartje A. van den Broek ◽  
Ilona H. Hollander ◽  
...  
Keyword(s):  
Image Processing ◽  
Liver Resection ◽  
Open Source ◽  
Future Liver Remnant ◽  
Volumetric Analysis ◽  
Source Image ◽  
Liver Remnant ◽  
The Future ◽  
Processing Software ◽  
Image Processing Software

Image Processing using Open Source Tools and their Implementation in the Analysis of Complex Microstructures

2021 ◽  
Vol 58 (8) ◽  
pp. 484-506
Author(s):  
U. P. Nayak ◽  
M. Müller ◽  
D. Britz ◽  
M.A. Guitar ◽  
F. Mücklich
Keyword(s):  
Image Processing ◽  
Image Segmentation ◽  
User Interface ◽  
Open Source ◽  
Microstructural Analysis ◽  
Microstructural Characterization ◽  
Source Image ◽  
Versatile Tool ◽  
Processing Software ◽  
Image Processing Software

Abstract Considering the dependance of materials’ properties on the microstructure, it is imperative to carry out a thorough microstructural characterization and analysis to bolster its development. This article is aimed to inform the users about the implementation of FIJI, an open source image processing software for image segmentation and quantitative microstructural analysis. The rapid advancement of computer technology in the past years has made it possible to swiftly segment and analyze hundreds of micrographs reducing hours’ worth of analysis time to a mere matter of minutes. This has led to the availability of several commercial image processing software programs primarily aimed at relatively inexperienced users. Despite the advantages like ‘one-click solutions’ offered by commercial software, the high licensing cost limits its widespread use in the metallographic community. Open-source platforms on the other hand, are free and easily available although rudimentary knowledge of the user-interface is a pre-requisite. In particular, the software FIJI has distinguished itself as a versatile tool, since it provides suitable extensions from image processing to segmentation to quantitative stereology and is continuously developed by a large user community. This article aims to introduce the FIJI program by familiarizing the user with its graphical user-interface and providing a sequential methodology to carry out image segmentation and quantitative microstructural analysis.

scholarly journals Nion Swift: Open Source Image Processing Software for Instrument Control, Data Acquisition, Organization, Visualization, and Analysis Using Python.

2019 ◽  
Vol 25 (S2) ◽  
pp. 122-123 ◽  
Author(s):  
Chris Meyer ◽  
Niklas Dellby ◽  
Jordan A. Hachtel ◽  
Tracy Lovejoy ◽  
Andreas Mittelberger ◽  
...  
Keyword(s):  
Image Processing ◽  
Data Acquisition ◽  
Open Source ◽  
Source Image ◽  
Control Data ◽  
Instrument Control ◽  
Processing Software ◽  
Image Processing Software

scholarly journals Stent Graft Sizing for Endovascular Abdominal Aneurysm Repair Using Open Source Image Processing Software

2020 ◽  
Author(s):  
Eva Knöps ◽  
Jan van Schaik ◽  
Koen E.A. van der Bogt ◽  
Hugo T.C. Veger ◽  
Hein Putter ◽  
...  
Keyword(s):  
Image Processing ◽  
Open Source ◽  
Stent Graft ◽  
Source Image ◽  
Abdominal Aneurysm ◽  
Processing Software ◽  
Image Processing Software ◽  
Aneurysm Repair

scholarly journals Multispectral tracing in densely labeled mouse brain with nTracer

2019 ◽  
Vol 35 (18) ◽  
pp. 3544-3546 ◽  
Author(s):  
Douglas H Roossien ◽  
Benjamin V Sadis ◽  
Yan Yan ◽  
John M Webb ◽  
Lia Y Min ◽  
...  
Keyword(s):  
Image Processing ◽  
Cell Morphology ◽  
Supplementary Information ◽  
Source Image ◽  
Supplementary Data ◽  
Tissue Samples ◽  
Neuronal Populations ◽  
Processing Software ◽  
Image Processing Software ◽  
Automated Tracing

Abstract Summary This note describes nTracer, an ImageJ plug-in for user-guided, semi-automated tracing of multispectral fluorescent tissue samples. This approach allows for rapid and accurate reconstruction of whole cell morphology of large neuronal populations in densely labeled brains. Availability and implementation nTracer was written as a plug-in for the open source image processing software ImageJ. The software, instructional documentation, tutorial videos, sample image and sample tracing results are available at https://www.cai-lab.org/ntracer-tutorial. Supplementary information Supplementary data are available at Bioinformatics online.

In situliver transection with portal vein ligation for rapid growth of the future liver remnant in two-stage liver resection

2012 ◽  
Vol 100 (3) ◽  
pp. 388-394 ◽  
Author(s):  
W. T. Knoefel ◽  
I. Gabor ◽  
A. Rehders ◽  
A. Alexander ◽  
M. Krausch ◽  
...  
Keyword(s):  
Liver Resection ◽  
Portal Vein ◽  
Rapid Growth ◽  
Future Liver Remnant ◽  
Portal Vein Ligation ◽  
Two Stage ◽  
Liver Remnant ◽  
The Future

Standardized measurement of the future liver remnant prior to extended liver resection: Methodology and clinical associations

Surgery ◽  
2000 ◽  
Vol 127 (5) ◽  
pp. 512-519 ◽  
Author(s):  
Jean-Nicolas Vauthey ◽  
Amin Chaoui ◽  
Kim-Anh Do ◽  
Malcolm M. Bilimoria ◽  
Marc J. Fenstermacher ◽  
...  
Keyword(s):  
Liver Resection ◽  
Future Liver Remnant ◽  
Liver Remnant ◽  
Extended Liver Resection ◽  
The Future ◽  
Standardized Measurement ◽  
Clinical Associations
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