Image Processing using Open Source Tools and their Implementation in the Analysis of Complex Microstructures

2021 ◽  
Vol 58 (8) ◽  
pp. 484-506
Author(s):  
U. P. Nayak ◽  
M. Müller ◽  
D. Britz ◽  
M.A. Guitar ◽  
F. Mücklich

Abstract Considering the dependance of materials’ properties on the microstructure, it is imperative to carry out a thorough microstructural characterization and analysis to bolster its development. This article is aimed to inform the users about the implementation of FIJI, an open source image processing software for image segmentation and quantitative microstructural analysis. The rapid advancement of computer technology in the past years has made it possible to swiftly segment and analyze hundreds of micrographs reducing hours’ worth of analysis time to a mere matter of minutes. This has led to the availability of several commercial image processing software programs primarily aimed at relatively inexperienced users. Despite the advantages like ‘one-click solutions’ offered by commercial software, the high licensing cost limits its widespread use in the metallographic community. Open-source platforms on the other hand, are free and easily available although rudimentary knowledge of the user-interface is a pre-requisite. In particular, the software FIJI has distinguished itself as a versatile tool, since it provides suitable extensions from image processing to segmentation to quantitative stereology and is continuously developed by a large user community. This article aims to introduce the FIJI program by familiarizing the user with its graphical user-interface and providing a sequential methodology to carry out image segmentation and quantitative microstructural analysis.

2019 ◽  
Vol 25 (S2) ◽  
pp. 122-123 ◽  
Author(s):  
Chris Meyer ◽  
Niklas Dellby ◽  
Jordan A. Hachtel ◽  
Tracy Lovejoy ◽  
Andreas Mittelberger ◽  
...  

2010 ◽  
Vol 34 (10) ◽  
pp. 2426-2433 ◽  
Author(s):  
Joost R. van der Vorst ◽  
Ronald M. van Dam ◽  
Rogier S. A. van Stiphout ◽  
Maartje A. van den Broek ◽  
Ilona H. Hollander ◽  
...  

2019 ◽  
Vol 35 (18) ◽  
pp. 3544-3546 ◽  
Author(s):  
Douglas H Roossien ◽  
Benjamin V Sadis ◽  
Yan Yan ◽  
John M Webb ◽  
Lia Y Min ◽  
...  

Abstract Summary This note describes nTracer, an ImageJ plug-in for user-guided, semi-automated tracing of multispectral fluorescent tissue samples. This approach allows for rapid and accurate reconstruction of whole cell morphology of large neuronal populations in densely labeled brains. Availability and implementation nTracer was written as a plug-in for the open source image processing software ImageJ. The software, instructional documentation, tutorial videos, sample image and sample tracing results are available at https://www.cai-lab.org/ntracer-tutorial. Supplementary information Supplementary data are available at Bioinformatics online.


2000 ◽  
Vol 179 ◽  
pp. 229-232
Author(s):  
Anita Joshi ◽  
Wahab Uddin

AbstractIn this paper we present complete two-dimensional measurements of the observed brightness of the 9th November 1990Hαflare, using a PDS microdensitometer scanner and image processing software MIDAS. The resulting isophotal contour maps, were used to describe morphological-cum-temporal behaviour of the flare and also the kernels of the flare. Correlation of theHαflare with SXR and MW radiations were also studied.


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