Genome-wide identification, characterization, and expression analysis of the expansin gene family in Chinese jujube (Ziziphus jujuba Mill.)

Planta ◽  
2018 ◽  
Vol 249 (3) ◽  
pp. 815-829 ◽  
Author(s):  
Lu Hou ◽  
Zhiyong Zhang ◽  
Suhan Dou ◽  
Yadong Zhang ◽  
Xiaoming Pang ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Chinese Jujube ◽  
Expansin Gene ◽  
Genome Wide ◽  
Ziziphus Jujuba

Genome-wide identification and expression analysis of the expansin gene family in tomato

2015 ◽  
Vol 291 (2) ◽  
pp. 597-608 ◽  
Author(s):  
Yongen Lu ◽  
Lifeng Liu ◽  
Xin Wang ◽  
Zhihui Han ◽  
Bo Ouyang ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Expansin Gene ◽  
Genome Wide

scholarly journals Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.)

2017 ◽  
Vol 18 (8) ◽  
pp. 1734 ◽  
Author(s):  
Shuang Song ◽  
Heying Zhou ◽  
Songbai Sheng ◽  
Ming Cao ◽  
Yingyue Li ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Profiling ◽  
Chinese Jujube ◽  
Genome Wide ◽  
Ziziphus Jujuba

scholarly journals Genome-wide analysis of the bZIP gene family in Chinese jujube (Ziziphus jujuba Mill.)

BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Yao Zhang ◽  
Weilin Gao ◽  
Hongtai Li ◽  
Yongkang Wang ◽  
Dengke Li ◽  
...  
Keyword(s):  
Gene Family ◽  
Chinese Jujube ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Ziziphus Jujuba

scholarly journals Genome-wide identification and expression analysis of expansin gene family in common wheat (Triticum aestivum L.)

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Zhisheng Han ◽  
Yanlin Liu ◽  
Xiong Deng ◽  
Dongmiao Liu ◽  
Yue Liu ◽  
...  
Keyword(s):  
Triticum Aestivum ◽  
Gene Family ◽  
Common Wheat ◽  
Expression Analysis ◽  
Triticum Aestivum L ◽  
Expansin Gene ◽  
Genome Wide

scholarly journals Genome-wide identification, characterization, and expression analysis of the expansin gene family in watermelon (Citrullus lanatus)

3 Biotech ◽  
2020 ◽  
Vol 10 (7) ◽  
Author(s):  
Wenrui Gao ◽  
Decui Li ◽  
Xiaoxue Fan ◽  
Yanjun Sun ◽  
Bing Han ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Citrullus Lanatus ◽  
Expansin Gene ◽  
Genome Wide

scholarly journals Genome-wide analysis of the bHLH gene family in Chinese jujube (Ziziphus jujuba Mill.) and wild jujube

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Hongtai Li ◽  
Weilin Gao ◽  
Chaoling Xue ◽  
Yao Zhang ◽  
Zhiguo Liu ◽  
...  
Keyword(s):  
Gene Family ◽  
Bhlh Gene ◽  
Chinese Jujube ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Ziziphus Jujuba

scholarly journals Genome-wide identification and analysis of MAPK and MAPKK gene family in Chinese jujube (Ziziphus jujuba Mill.)

BMC Genomics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Zhiguo Liu ◽  
Liman Zhang ◽  
Chaoling Xue ◽  
Hu Fang ◽  
Jin Zhao ◽  
...  
Keyword(s):  
Gene Family ◽  
Chinese Jujube ◽  
Genome Wide ◽  
Ziziphus Jujuba

scholarly journals Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cuili Pan ◽  
Zhaoxiong Lei ◽  
Shuzhe Wang ◽  
Xingping Wang ◽  
Dawei Wei ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Adipocyte Differentiation ◽  
Bos Taurus ◽  
Adipogenic Differentiation ◽  
Critical Role ◽  
Bos Indicus ◽  
Specific Expression ◽  
Genome Wide ◽  
A Genome

Abstract Background Cyclin-dependent kinases (CDKs) are protein kinases regulating important cellular processes such as cell cycle and transcription. Many CDK genes also play a critical role during adipogenic differentiation, but the role of CDK gene family in regulating bovine adipocyte differentiation has not been studied. Therefore, the present study aims to characterize the CDK gene family in bovine and study their expression pattern during adipocyte differentiation. Results We performed a genome-wide analysis and identified a number of CDK genes in several bovine species. The CDK genes were classified into 8 subfamilies through phylogenetic analysis. We found that 25 bovine CDK genes were distributed in 16 different chromosomes. Collinearity analysis revealed that the CDK gene family in Bos taurus is homologous with Bos indicus, Hybrid-Bos taurus, Hybrid Bos indicus, Bos grunniens and Bubalus bubalis. Several CDK genes had higher expression levels in preadipocytes than in differentiated adipocytes, as shown by RNA-seq analysis and qPCR, suggesting a role in the growth of emerging lipid droplets. Conclusion In this research, 185 CDK genes were identified and grouped into eight distinct clades in Bovidae, showing extensively homology. Global expression analysis of different bovine tissues and specific expression analysis during adipocytes differentiation revealed CDK4, CDK7, CDK8, CDK9 and CDK14 may be involved in bovine adipocyte differentiation. The results provide a basis for further study to determine the roles of CDK gene family in regulating adipocyte differentiation, which is beneficial for beef quality improvement.

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