Characterization of the lytic archaeal virus Drs3 infecting Methanobacterium formicicum

2018 ◽  
Vol 164 (3) ◽  
pp. 667-674 ◽  
Author(s):  
Sandro Wolf ◽  
Martin A. Fischer ◽  
Anne Kupczok ◽  
Jochen Reetz ◽  
Tobias Kern ◽  
...  
Keyword(s):  
Archaeal Virus ◽  
Methanobacterium Formicicum

scholarly journals Familial Relationships in Hyperthermo- and Acidophilic Archaeal Viruses

2010 ◽  
Vol 84 (9) ◽  
pp. 4747-4754 ◽  
Author(s):  
Lotta Johanna Happonen ◽  
Peter Redder ◽  
Xu Peng ◽  
Laila Johanne Reigstad ◽  
David Prangishvili ◽  
...  
Keyword(s):  
Structural Organization ◽  
Hot Springs ◽  
Three Dimensional ◽  
Life Cycles ◽  
Dimensional Structure ◽  
Archaeal Virus ◽  
Archaeal Viruses ◽  
Icosahedral Virus ◽  
Host Cell Interactions

ABSTRACT Archaea often live in extreme, harsh environments such as acidic hot springs and hypersaline waters. To date, only two icosahedrally symmetric, membrane-containing archaeal viruses, SH1 and Sulfolobus turreted icosahedral virus (STIV), have been described in detail. We report the sequence and three-dimensional structure of a third such virus isolated from a hyperthermoacidophilic crenarchaeon, Sulfolobus strain G4ST-2. Characterization of this new isolate revealed it to be similar to STIV on the levels of genome and structural organization. The genome organization indicates that these two viruses have diverged from a common ancestor. Interestingly, the prominent surface turrets of the two viruses are strikingly different. By sequencing and mass spectrometry, we mapped several large insertions and deletions in the known structural proteins that could account for these differences and showed that both viruses can infect the same host. A combination of genomic and proteomic analyses revealed important new insights into the structural organization of these viruses and added to our limited knowledge of archaeal virus life cycles and host-cell interactions.

scholarly journals Isolation and Characterization of Metallosphaera Turreted Icosahedral Virus, a Founding Member of a New Family of Archaeal Viruses

2017 ◽  
Vol 91 (20) ◽  
Author(s):  
Cassia Wagner ◽  
Vijay Reddy ◽  
Francisco Asturias ◽  
Maryam Khoshouei ◽  
John E. Johnson ◽  
...  
Keyword(s):  
Hot Spring ◽  
Archaeal Virus ◽  
Content Type ◽  
Founding Member ◽  
New Family ◽  
Isolation And Characterization ◽  
Virus Diversity ◽  
Archaeal Viruses ◽  
Icosahedral Virus

ABSTRACT Our understanding of archaeal virus diversity and structure is just beginning to emerge. Here we describe a new archaeal virus, tentatively named Metallosphaera turreted icosahedral virus (MTIV), that was isolated from an acidic hot spring in Yellowstone National Park, USA. Two strains of the virus were identified and were found to replicate in an archaeal host species closely related to Metallosphaera yellowstonensis. Each strain encodes a 9.8- to 9.9-kb linear double-stranded DNA (dsDNA) genome with large inverted terminal repeats. Each genome encodes 21 open reading frames (ORFs). The ORFs display high homology between the strains, but they are quite distinct from other known viral genes. The 70-nm-diameter virion is built on a T=28 icosahedral lattice. Both single particle cryo-electron microscopy and cryotomography reconstructions reveal an unusual structure that has 42 turret-like projections: 12 pentameric turrets positioned on the icosahedral 5-fold axes and 30 turrets with apparent hexameric symmetry positioned on the icosahedral 2-fold axes. Both the virion structural properties and the genome content support MTIV as the founding member of a new family of archaeal viruses. IMPORTANCE Many archaeal viruses are quite different from viruses infecting bacteria and eukaryotes. Initial characterization of MTIV reveals a virus distinct from other known bacterial, eukaryotic, and archaeal viruses; this finding suggests that viruses infecting Archaea are still an understudied group. As the first known virus infecting a Metallosphaera sp., MTIV provides a new system for exploring archaeal virology by examining host-virus interactions and the unique features of MTIV structure-function relationships. These studies will likely expand our understanding of virus ecology and evolution.

scholarly journals Correction for Hartman et al., “Discovery and Characterization of Thermoproteus Spherical Piliferous Virus 1: a Spherical Archaeal Virus Decorated with Unusual Filaments”

2020 ◽  
Vol 94 (19) ◽  
Author(s):  
Ross Hartman ◽  
Lieuwe Biewenga ◽  
Jacob Munson-McGee ◽  
Mohammed Refai ◽  
Eric S. Boyd ◽  
...  
Keyword(s):  
Archaeal Virus

scholarly journals Viral Diversity in Hot Springs of Pozzuoli, Italy, and Characterization of a Unique Archaeal Virus, Acidianus Bottle-Shaped Virus, from a New Family, the Ampullaviridae

2005 ◽  
Vol 79 (15) ◽  
pp. 9904-9911 ◽  
Author(s):  
Monika Häring ◽  
Reinhard Rachel ◽  
Xu Peng ◽  
Roger A. Garrett ◽  
David Prangishvili
Keyword(s):  
Hot Springs ◽  
Host Cells ◽  
Archaeal Virus ◽  
Thin Filaments ◽  
New Family ◽  
Double Stranded Dna ◽  
Rigid Rods ◽  
Pointed End ◽  
Archaeal Genus

ABSTRACT Virus-like particles with five different morphotypes were observed in an enriched environmental sample from a hot, acidic spring (87 to 93°C, pH 1.5) in Pozzuoli, Italy. The morphotypes included rigid rods, flexible filaments, and novel, exceptional forms. Particles of each type were isolated, and they were shown to represent viable virions of five novel viruses which infect members of the hyperthermophilic archaeal genus Acidianus. One of these, named the Acidianus bottle-shaped virus, ABV, exhibits a previously unreported morphotype. The bottle-shaped virion carries an envelope which encases a funnel-shaped core. The pointed end of the virion is likely to be involved in adsorption and channeling of viral DNA into host cells. The broad end exhibits 20 (± 2) thin filaments which appear to be inserted into a disk, or ring, and are interconnected at their bases. These filaments are apparently not involved in adsorption. ABV virions contain six proteins in the size range 15 to 80 kDa and a 23.9-kb linear, double-stranded DNA genome. Virus replication does not cause lysis of host cells. On the basis of its unique morphotype and structure, we propose to assign ABV to a new viral family, the Ampullaviridae.

scholarly journals Biochemical and Phylogenetic Characterization of the dUTPase from the Archaeal Virus SIRV

1998 ◽  
Vol 273 (11) ◽  
pp. 6024-6029 ◽  
Author(s):  
David Prangishvili ◽  
Hans-Peter Klenk ◽  
Gunnar Jakobs ◽  
Alexander Schmiechen ◽  
Christine Hanselmann ◽  
...  
Keyword(s):  
Archaeal Virus ◽  
Phylogenetic Characterization

Morphological Characterization of Mycobacteriophage R1

1974 ◽  
Vol 32 ◽  
pp. 254-255
Author(s):  
B. L. Soloff ◽  
T. A. Rado
Keyword(s):  
Carbon Source ◽  
Stationary Phase ◽  
Growth Phase ◽  
Minimal Medium ◽  
Morphological Characterization ◽  
Logarithmic Growth Phase ◽  
Complete Lysis ◽  
Lysogenic Culture ◽  
Logarithmic Growth

Mycobacteriophage R1 was originally isolated from a lysogenic culture of M. butyricum. The virus was propagated on a leucine-requiring derivative of M. smegmatis, 607 leu−, isolated by nitrosoguanidine mutagenesis of typestrain ATCC 607. Growth was accomplished in a minimal medium containing glycerol and glucose as carbon source and enriched by the addition of 80 μg/ ml L-leucine. Bacteria in early logarithmic growth phase were infected with virus at a multiplicity of 5, and incubated with aeration for 8 hours. The partially lysed suspension was diluted 1:10 in growth medium and incubated for a further 8 hours. This permitted stationary phase cells to re-enter logarithmic growth and resulted in complete lysis of the culture.

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