scholarly journals Nickel binding properties of Helicobacter pylori UreF, an accessory protein in the nickel-based activation of urease

2013 ◽  
Vol 19 (3) ◽  
pp. 319-334 ◽  
Author(s):  
Barbara Zambelli ◽  
Andrea Berardi ◽  
Vlad Martin-Diaconescu ◽  
Luca Mazzei ◽  
Francesco Musiani ◽  
...  
2021 ◽  
Vol 22 (24) ◽  
pp. 13210
Author(s):  
Danuta Witkowska ◽  
Agnieszka Szebesczyk ◽  
Joanna Wątły ◽  
Michał Braczkowski ◽  
Magdalena Rowińska-Żyrek

Combined potentiometric titration and isothermal titration calorimetry (ITC) methods were used to study the interactions of nickel(II) ions with the N-terminal fragments and histidine-rich fragments of Hpn-like protein from two Helicobacter pylori strains (11637 and 26695). The ITC measurements were performed at various temperatures and buffers in order to extract proton-independent reaction enthalpies of nickel binding to each of the studied protein fragments. We bring up the problem of ITC results of nickel binding to the Hpn-like protein being not always compatible with those from potentiometry and MS regarding the stoichiometry and affinity. The roles of the ATCUN motif and multiple His and Gln residues in Ni(II) binding are discussed. The results provided the possibility to compare the Ni(II) binding properties between N-terminal and histidine-rich part of Hpn-like protein and between N-terminal parts of two Hpn-like strains, which differ mainly in the number of glutamine residues.


2004 ◽  
Vol 279 (17) ◽  
pp. 17466-17472 ◽  
Author(s):  
Hyung-Sik Won ◽  
Yeon-Hee Lee ◽  
Ji-Hun Kim ◽  
In Seon Shin ◽  
Mann Hyung Lee ◽  
...  

2009 ◽  
Vol 422 (1) ◽  
pp. 91-100 ◽  
Author(s):  
Matteo Bellucci ◽  
Barbara Zambelli ◽  
Francesco Musiani ◽  
Paola Turano ◽  
Stefano Ciurli

The persistence of Helicobacter pylori in the hostile environment of the human stomach is ensured by the activity of urease. The essentiality of Ni2+ for this enzyme demands proper intracellular trafficking of this metal ion. The metallo-chaperone UreE promotes Ni2+ insertion into the apo-enzyme in the last step of urease maturation while facilitating concomitant GTP hydrolysis. The present study focuses on the metal-binding properties of HpUreE (Helicobacter pylori UreE) and its interaction with the related accessory protein HpUreG, a GTPase involved in the assembly of the urease active site. ITC (isothermal titration calorimetry) showed that HpUreE binds one equivalent of Ni2+ (Kd=0.15 μM) or Zn2+ (Kd=0.49 μM) per dimer, without modification of the protein oligomeric state, as indicated by light scattering. Different ligand environments for Zn2+ and Ni2+, which involve crucial histidine residues, were revealed by site-directed mutagenesis, suggesting a mechanism for discriminating metal-ion-specific binding. The formation of a HpUreE–HpUreG protein complex was revealed by NMR spectroscopy, and the thermodynamics of this interaction were established using ITC. A role for Zn2+, and not for Ni2+, in the stabilization of this complex was demonstrated using size-exclusion chromatography, light scattering, and ITC experiments. A calculated viable structure for the complex suggested the presence of a novel binding site for Zn2+, actually detected using ITC and site-directed mutagenesis. The results are discussed in relation to available evidence of a UreE–UreG functional interaction in vivo. A possible role for Zn2+ in the Ni2+-dependent urease system is envisaged.


2010 ◽  
Vol 78 (13) ◽  
pp. 2839-2848 ◽  
Author(s):  
Robert Lam ◽  
Vladimir Romanov ◽  
Kathy Johns ◽  
Kevin P. Battaile ◽  
Jean Wu-Brown ◽  
...  

Biochemistry ◽  
2018 ◽  
Vol 57 (28) ◽  
pp. 4155-4164 ◽  
Author(s):  
Toshiki G. Nakashige ◽  
Sarah E. J. Bowman ◽  
Emily M. Zygiel ◽  
Catherine L. Drennan ◽  
Elizabeth M. Nolan

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