scholarly journals Application of metagenomic next-generation sequencing in the diagnosis and treatment guidance of Pneumocystis jirovecii pneumonia in renal transplant recipients

Author(s):  
Feng Zhang ◽  
Jia Chen ◽  
He Huang ◽  
Xiaolong Deng ◽  
Wei Zhang ◽  
...  
2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Trang Dinh Van ◽  
Rebecca J. Rockett ◽  
An Phan Hai Ha ◽  
Trung Vu Nguyen ◽  
Dominic E. Dwyer

JC polyomavirus (JCPyV) may cause clinical syndromes such as progressive multifocal leukoencephalopathy in immunocompromised patients. Here, we report seven complete genome sequences of JCPyV genotype 7A, generated directly from urine samples from Vietnamese renal transplant recipients by using rolling-circle amplification and next-generation sequencing.


2021 ◽  
Author(s):  
Feng Zhang ◽  
Jia Chen ◽  
He Huang ◽  
Rangjiao Liu ◽  
Xiaomei Ren ◽  
...  

Abstract Background Pneumocystis jirovecii pneumonia (PJP) is difficult to be diagnosed, so this study explored if PJP could be diagnosed by metagenomic next-generation sequencing (mNGS) and if mNGS could guide the therapy of PJP. Methods mNGS successfully diagnosed 13 out of 14 PJP recipients with 11 through peripheral blood samples, verified by PCR. Ten non-PJP recipients were enrolled as the control group. Results Blood tests revealed a high β-Dglucan (BDG) level in all recipients with PJP during the hospitalization. Four (28.6%) of 14 PJP patients were infected with cytomegalovirus simultaneously, while 8 (57.1%) suffered from a combined infection caused by Torque teno virus. Five (35.7%) of 14 cases died of PJP or the subsequent bacteremias/bacterial pneumonia with a longer interval between the onset and diagnosis of/the available therapy against PJP than survival cases. Univariate analysis of Characteristics between PJP and non-PJP recipients revealed that BDG assays was higher at the admission in PJP group ( P = 0.011). Conclusion This present study supports the value of mNGS detection of blood sample in diagnosing PJP, which could assist clinical decision for therapy against PJ and improve outcome of PJP. The study also highlights the sensitivity of BDG assays. Cytomegalovirus and Torque teno virus infections often occur at the same time of PJP, thus can be alerts of PJP.


2021 ◽  
Author(s):  
Feng Zhang ◽  
Jia Chen ◽  
He Huang ◽  
Rangjiao Liu ◽  
Xiaomei Ren ◽  
...  

Abstract Purpose: Pneumocystis jirovecii pneumonia (PJP) is difficult to be diagnosed, so this study explored if PJP could be diagnosed by metagenomic next-generation sequencing (mNGS) and if mNGS could guide the therapy of PJP. Methods: mNGS successfully diagnosed 13 out of 14 PJP recipients with 11 through peripheral blood samples, verified by PCR. Ten non-PJP recipients were enrolled as the control group. Results: Blood tests revealed a high β-Dglucan (BDG) level in all recipients with PJP during the hospitalization. Four (28.6%) of 14 PJP patients were infected with cytomegalovirus simultaneously, while 8 (57.1%) suffered from a combined infection caused by Torque teno virus. Five (35.7%) of 14 cases died of PJP or the subsequent bacteremias/bacterial pneumonia with a longer interval between the onset and diagnosis of/the available therapy against PJP than survival cases. Univariate analysis of Characteristics between PJP and non-PJP recipients revealed that BDG assays was higher at the admission in PJP group ( P =0.011). Conclusions: This present study supports the value of mNGS detection of blood sample in diagnosing PJP, which could assist clinical decision for therapy against PJ and improve outcome of PJP. The study also highlights the sensitivity of BDG assays. Cytomegalovirus and Torque teno virus infections often occur at the same time of PJP, thus can be alerts of PJP.


2017 ◽  
Vol 10 (6) ◽  
pp. 845-851 ◽  
Author(s):  
Jonathan Ling ◽  
Tara Anderson ◽  
Sanchia Warren ◽  
Geoffrey Kirkland ◽  
Matthew Jose ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document