Molecular and morphological data reveals new insights into genetic diversity and population structure of Chinese cherry (Prunus pseudocerasus Lindl.) landraces

2018 ◽  
Vol 65 (8) ◽  
pp. 2169-2187 ◽  
Author(s):  
Tao Chen ◽  
Yue-yang Hu ◽  
Qing Chen ◽  
Yan Wang ◽  
Jing Zhang ◽  
...  
Diversity ◽  
2021 ◽  
Vol 13 (2) ◽  
pp. 56
Author(s):  
Keity S. Nishikawa ◽  
Mariana Negri ◽  
Fernando L. Mantelatto

Recent studies on genetic variability have revealed different patterns of genetic structure among populations of marine decapod species with wide geographical distribution. The hermit crab Clibanarius antillensis has a broad distribution along the western Atlantic Ocean, from south Florida (United States) to Santa Catarina (Brazil). This factor, in addition to differences in larval morphology and in adult coloration, makes this species a good model for studies on intraspecific variations. Therefore, we evaluated the molecular and morphological variability of C. antillensis along its distribution in order to check the levels of population structure. The results were based on the morphological analyses of 187 individuals and 38 partial sequences of the mitochondrial gene 16S rRNA and 46 of cytochrome c oxidase subunit I (COI) from specimens whose locations covered the whole species distribution. The molecular analyses did not show any apparent population structure of C. antillensis. This result was corroborated by the morphological analyses since the characters analyzed did not show any pattern of variation. Our results may be explained by a set of factors, such as the dispersive potential of the species and the absence of barriers that could prevent gene flow. In addition, high genetic diversity was observed, mainly for COI, which may be explained by the historical processes of the species, which seem to be in almost constant expansion in the last 700,000 years and experienced no genetic bottleneck. Apparently, this species was little affected by the climate fluctuations of Pleistocene. Additionally, our morphological analyses allowed us to present herein a redescription of the studied species since we noted differences from the characters in the diagnosis.


2015 ◽  
Vol 34 (2) ◽  
pp. 440-453 ◽  
Author(s):  
Tao Chen ◽  
Xiao-jiao Huang ◽  
Jing Zhang ◽  
Qing Chen ◽  
Yin Liu ◽  
...  

Author(s):  
Jacob Popoola ◽  
David Igwe ◽  
Opeyemi Jegede ◽  
Victoria Iwu ◽  
Adegoke Adegbite ◽  
...  

Evaluation of agronomic practices, genetic diversity and population structure of Moringa oleifera (Lam.) is crucial to its sustainable utilization to ensure food and nutritional security. Four agronomic practices of field preparation and soil analysis, regeneration, weeding and pruning, as well as harvesting, were adopted. Genetic diversity and population structure of 20 populations were evaluated using amplified fragment length polymorphism (AFLP) primer pairs (E-ACC/M-CAC and E-ACA/M-CAG). The effects of agronomic practices on leaf quantity production were evaluated using standard procedures. The physico-chemical and morphological data were analyzed using descriptive statistics, while genetic diversity, population structure, dendrogram reconstruction, and Principal Component Analysis (PCA) were analyzed from the AFLP genetic data. Significant effects (P ≤ 0.05) of agronomic practices on the quantity of leaf production were recorded across the accessions. The two primer pairs generated a total of 80 alleles with a mean major allele frequency of 0.0250. Gene diversity and polymorphic information content (PIC) values were high with a mean of 0.98 and 0.974, respectively. The Gst value of 0.0490 indicated that 5 % of the total genetic divergence was among the population while 95 % within the population. Dendrogram reconstruction with genetic distance ranging from 0.87 to 0.96 segregated the accessions into eleven clusters while PCA generated six cluster groups. Field preparation and physico-chemical soil properties, regeneration, weeding and pruning, and stand development, as well as harvesting, influenced the leaf yield and genetic diversity observed in this study. The genetic data revealed that some accessions were clustered along eco-geographical lines while others grouped disparately. Identified potential parent genotypes with valuable and desirable genetic traits can be exploited for commercial, breeding and conservation purposes to ensure sustainable utilization of the species in Nigeria.


2020 ◽  
Vol 52 (6) ◽  
Author(s):  
Anpei Zhou ◽  
Dan Zong ◽  
Peihua Gan ◽  
Yao Zhang ◽  
Dan Li ◽  
...  

2014 ◽  
Vol 21 (6) ◽  
pp. 723-731
Author(s):  
Xu Gangbiao ◽  
Liang Yan ◽  
Jiang Yan ◽  
Liu Xiongsheng ◽  
Hu Shangli ◽  
...  

2010 ◽  
Vol 36 (5) ◽  
pp. 744-753 ◽  
Author(s):  
Ting-Ting QIAO ◽  
Chun-Lei MA ◽  
Yan-Hua ZHOU ◽  
Ming-Zhe YAO ◽  
Rao LIU ◽  
...  

2013 ◽  
Vol 38 (12) ◽  
pp. 2286-2296 ◽  
Author(s):  
Wen-Di YUE ◽  
Li-Bin WEI ◽  
Ti-De ZHANG ◽  
Chun LI ◽  
Hong-Mei MIAO ◽  
...  

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