Embryo development of hatching eggs of superior local broiler (ALPU) with Arab native chickens (Kamaras)

Efforts to improve the quality of local chickens, especially free-range chickens, are carried out by improving genetic traits, namely through a strict selection method to produce broilers with the name of Superior Local Broilers (ALPU) and laying purposes with Arab Kampung Chickens (Kamaras). This study was conducted to obtain information on the comparison of ALPU and Kamaras embryo development for genetic improvement as the basis for further research. This study used 105 ALPU hatching eggs and 105 Kamaras hatching eggs, the observations were carried out for 21 days. Eggs were collected for 7 days and then put into the incubator, then observed every day by breaking each 5 ALPU and Kamaras eggs to see 7 parameters of embryo development in the form of: body weight, body length, head circumference, neck length, beak length, wing length and leg length. The results showed that there was no significant developmental difference between ALPU and Kamaras embryos. However, the embryo weight and beak length of Kamaras tended to be larger than those of ALPU, while the head circumference and wing length of ALPU tended to be larger than that of Kamaras. In conclusion, the embryonic development between ALPU and Kamaras showed relatively similar embryo development during the hatching period.

Meiotic Cas9 expression mediates gene conversion in the male and female mouse germline

Highly efficient gene conversion systems have the potential to facilitate the study of complex genetic traits using laboratory mice and, if implemented as a “gene drive,” to limit loss of biodiversity and disease transmission caused by wild rodent populations. We previously showed that such a system of gene conversion from heterozygous to homozygous after a sequence targeted CRISPR/Cas9 double-strand DNA break (DSB) is feasible in the female mouse germline. In the male germline, however, all DSBs were instead repaired by end joining (EJ) mechanisms to form an “insertion/deletion” (indel) mutation. These observations suggested that timing Cas9 expression to coincide with meiosis I is critical to favor conditions when homologous chromosomes are aligned and interchromosomal homology-directed repair (HDR) mechanisms predominate. Here, using a Cas9 knock-in allele at the Spo11 locus, we show that meiotic expression of Cas9 does indeed mediate gene conversion in the male as well as in the female germline. However, the low frequency of both HDR and indel mutation in both male and female germlines suggests that Cas9 may be expressed from the Spo11 locus at levels too low for efficient DSB formation. We suggest that more robust Cas9 expression initiated during early meiosis I may improve the efficiency of gene conversion and further increase the rate of “super-mendelian” inheritance from both male and female mice.

Selection of Elite dura-Type Parents to Produce Dwarf Progenies of Elaeis guineensis Using Genetic Parameters

The low annual growth rate of the stipe in oil palm progenies is desirable to increase these crops’ productive and economic life. Recurrent reciprocal selection (R.R.S.) has allowed the development of oil palm populations through several breeding cycles with an increased frequency of favorable alleles associated with traits of interest. The present study evaluated families derived from Deli dura × African dura crosses. For 12 years, the yield, vegetative characteristics, and the amount of oil in seven dura progenies were assessed to estimate, from the information collected, the genetic parameters, heritability, and phenotypic correlations among quantitative genetic traits of high-yielding dwarf progenies. The analysis was carried out using analysis of variance, followed by a comparison of means for all estimated traits. The effect of the progenies was highly significant (p ≤ 0.01) for most traits. The yield values, expressed in fresh fruit bunches (FFB) for the progenies, ranged from 165 to 208 kg per palm per year. The oil-to-bunch ratio (O/B) ranged from 17% to 19%, with an overall average of 18%. One of the essential characteristics in this study was the vertical growth of the stipe. Progenies P6 and P7 were identified as those with the lowest annual increase in height, with values of 0.29 and 0.33 m year−1. The values indicate that these are slow-growing cultivars with a high FFB yield and O/B. The highest heritabilities were found for the vegetative trait height (71.62%) and the number of leaflets (46.64%). The development of dura parents with slow growth characteristics in combination with a high bunch and oil production allows extending the productive life of the crop to more than 35 years, providing added value to obtaining differentiated cultivars of oil palm.

Pathogenesis of Autoimmune Hepatitis—Cellular and Molecular Mechanisms

Pediatric autoimmune liver disorders include autoimmune hepatitis (AIH), autoimmune sclerosing cholangitis (ASC), and de novo AIH after liver transplantation. AIH is an idiopathic disease characterized by immune-mediated hepatocyte injury associated with the destruction of liver cells, causing inflammation, liver failure, and fibrosis, typically associated with autoantibodies. The etiology of AIH is not entirely unraveled, but evidence supports an intricate interaction among genetic variants, environmental factors, and epigenetic modifications. The pathogenesis of AIH comprises the interaction between specific genetic traits and molecular mimicry for disease development, impaired immunoregulatory mechanisms, including CD4+ T cell population and Treg cells, alongside other contributory roles played by CD8+ cytotoxicity and autoantibody production by B cells. These findings delineate an intricate pathway that includes gene to gene and gene to environment interactions with various drugs, viral infections, and the complex microbiome. Epigenetics emphasizes gene expression through hereditary and reversible modifications of the chromatin architecture without interfering with the DNA sequence. These alterations comprise DNA methylation, histone transformations, and non-coding small (miRNA) and long (lncRNA) RNA transcriptions. The current first-line therapy comprises prednisolone plus azathioprine to induce clinical and biochemical remission. Further understanding of the cellular and molecular mechanisms encountered in AIH may depict their impact on clinical aspects, detect biomarkers, and guide toward novel, effective, and better-targeted therapies with fewer side effects.

Simulation-based indices for a climate-resilient agriculture - insights from ADAPTER

<p>Agriculture is among the sectors that are most vulnerable to extreme weather conditions and climate change. In Germany, the dry and hot summers 2018, 2019, and 2020 have brought this into the focus of public attention. Agricultural actors like farmers, advisors or companies are concerned to adapt to interannual climate variability and extremes. In the ADAPTER project, we collaborate with stakeholders from these groups and generate practically relevant information, tailored climate change indices and usable information products.</p> <p> </p> <p>The challenges of climate change for agriculture are manifold. The genetic traits of crops need to be adapted to a new climatic average, for instance by breeding new sorts of crops that are specialised for warmer and dryer conditions (i.e. maximising average yields). Agricultural practises need to be adapted to changing seasonal weather patterns under changing climate conditions. It is also vital to ensure the resilience to climate extremes by aiming for a low inter-annual yield variability, in order to prevent price shocks or food shortages.</p> <p> </p> <p>In order to adequately determine the optimal balance between specialisation and risk diversification, the agricultural sector hence requires knowledge not only about changes in the mean climate, but also on the variance around the changing mean. In this contribution, we focus on this second aspect by analysing the potential impact of forced changes in climate variability on the stability of crop yields in central Europe.</p> <p> </p> <p>We analyse the changing climate variability in 85 regional climate model projections from Coordinated Downscaling Experiments over Europe (EURO-CORDEX). We first show how the projections indicate a general increase in climate variability during critical development stages of wheat, rapeseed and maize in Europe. Second, we determine several more specific agronomic climate indices that capture events that have previously been shown to be critical for yields, for instance the occurrence of high daily maximum temperature, the seasonal sum of rainfall, the number of dry days, or the occurrence of compound events with simultaneous drought and increased temperatures. Finally, we illustrate how the results can be made accessible to practitioners in the agriculture sector by co-designing interactive browser applications, thus directly supporting the adaptation of the agricultural system to climate change.</p> <p> </p>

CCR5Δ32 in Brazil: Impacts of a European Genetic Variant on a Highly Admixed Population

The genetic background of Brazilians encompasses Amerindian, African, and European components as a result of the colonization of an already Amerindian inhabited region by Europeans, associated to a massive influx of Africans. Other migratory flows introduced into the Brazilian population genetic components from Asia and the Middle East. Currently, Brazil has a highly admixed population and, therefore, the study of genetic factors in the context of health or disease in Brazil is a challenging and remarkably interesting subject. This phenomenon is exemplified by the genetic variant CCR5Δ32, a 32 base-pair deletion in the CCR5 gene. CCR5Δ32 originated in Europe, but the time of origin as well as the selective pressures that allowed the maintenance of this variant and the establishment of its current frequencies in the different human populations is still a field of debates. Due to its origin, the CCR5Δ32 allele frequency is high in European-derived populations (~10%) and low in Asian and African native human populations. In Brazil, the CCR5Δ32 allele frequency is intermediate (4-6%) and varies on the Brazilian States, depending on the migratory history of each region. CCR5 is a protein that regulates the activity of several immune cells, also acting as the main HIV-1 co-receptor. The CCR5 expression is influenced by CCR5Δ32 genotypes. No CCR5 expression is observed in CCR5Δ32 homozygous individuals. Thus, the CCR5Δ32 has particular effects on different diseases. At the population level, the effect that CCR5Δ32 has on European populations may be different than that observed in highly admixed populations. Besides less evident due to its low frequency in admixed groups, the effect of the CCR5Δ32 variant may be affected by other genetic traits. Understanding the effects of CCR5Δ32 on Brazilians is essential to predict the potential use of pharmacological CCR5 modulators in Brazil. Therefore, this study reviews the impacts of the CCR5Δ32 on the Brazilian population, considering infectious diseases, inflammatory conditions, and cancer. Finally, this article provides a general discussion concerning the impacts of a European-derived variant, the CCR5Δ32, on a highly admixed population.

Advanced Healthcare Services Leading to Relax Natural Selection May Have Been Contributing to Global and Regional Increase of Dementia Incidence

BackgroundAgeing and genetic traits can only explain the increasing dementia incidence partially. Advanced healthcare services allowing dementia patients to survive natural selection (die of dementia) and pass their genes onto their next generation. MethodsCountry-specific estimates of dementia incidence rates (all ages and 15-49 years old), Biology State Index (Is) expressing reduced natural selection, ageing indexed by life expectancy e(65), GDP PPP and urbanization were obtained for analysing the global and regional correlations between reduced natural selection and dementia incidence rate with SPSS v. 27. Results Worldwide, both Is significantly, but inversely, correlated to dementia incidence rates for both populations in bivariate correlations. These relationships remained in the populations of all ages and 15-49 years old regardless of the competing contributing effects from ageing, GDP and urbanization in partial correlation model. Enter multiple linear regression showed that Is was the significant predictor of dementia incidence in populations of all ages and 15-49 years old. Subsequently, Is was selected as the variable having the greatest influence on dementia incidence in stepwise multiple linear regression. Is corelated to dementia incidence more strongly in developed population groupings. ConclusionsWorldwide, reduced natural selection may be another the significant contributor to the increasing dementia incidence with special regard to developed population.

Population analysis of Legionella pneumophila reveals a basis for resistance to complement-mediated killing

Legionella pneumophila is the most common cause of the severe respiratory infection known as Legionnaires’ disease. However, the microorganism is typically a symbiont of free-living amoeba, and our understanding of the bacterial factors that determine human pathogenicity is limited. Here we carried out a population genomic study of 902 L. pneumophila isolates from human clinical and environmental samples to examine their genetic diversity, global distribution and the basis for human pathogenicity. We find that the capacity for human disease is representative of the breadth of species diversity although some clones are more commonly associated with clinical infections. We identified a single gene (lag-1) to be most strongly associated with clinical isolates. lag-1, which encodes an O-acetyltransferase for lipopolysaccharide modification, has been distributed horizontally across all major phylogenetic clades of L. pneumophila by frequent recent recombination events. The gene confers resistance to complement-mediated killing in human serum by inhibiting deposition of classical pathway molecules on the bacterial surface. Furthermore, acquisition of lag-1 inhibits complement-dependent phagocytosis by human neutrophils, and promoted survival in a mouse model of pulmonary legionellosis. Thus, our results reveal L. pneumophila genetic traits linked to disease and provide a molecular basis for resistance to complement-mediated killing.