An association mapping approach to identify flowering time genes in natural populations of Lolium perenne (L.)

2005 ◽  
Vol 15 (3) ◽  
pp. 233-245 ◽  
Author(s):  
Leif Skøt ◽  
Mervyn O. Humphreys ◽  
Ian Armstead ◽  
Sue Heywood ◽  
Kirsten P. Skøt ◽  
...  
Author(s):  
Basma Abdulaimma ◽  
Abir Hussain ◽  
Paul Fergus ◽  
Dhiya Al-Jumeily ◽  
Casimiro Aday Curbelo Montañez ◽  
...  

Plant Science ◽  
2011 ◽  
Vol 180 (2) ◽  
pp. 228-237 ◽  
Author(s):  
Alice Fiil ◽  
Ingo Lenk ◽  
Klaus Petersen ◽  
Christian S. Jensen ◽  
Klaus K. Nielsen ◽  
...  

Genetica ◽  
2014 ◽  
Vol 143 (1) ◽  
pp. 1-10 ◽  
Author(s):  
Bhupender Kumar ◽  
Akshay Talukdar ◽  
Khushbu Verma ◽  
Indu Bala ◽  
G. D. Harish ◽  
...  

2005 ◽  
Vol 32 (4) ◽  
pp. 345 ◽  
Author(s):  
Somrutai Winichayakul ◽  
Nicola L. Beswick ◽  
Caroline Dean ◽  
Richard C. Macknight

The autonomous floral promotion pathway plays a key role in regulating the flowering time of the model dicot Arabidopsis thaliana (L.) Heynh. To investigate whether this pathway is present in monocots, two autonomous pathway components, FCA and FY, were isolated from rice (Oryza sativa L.) and ryegrass (Lolium perenne L.). The predicted FCA proteins (OsFCA and LpFCA) are highly conserved over the RNA-binding and WW protein interaction domains, and the FY proteins (OsFY and LpFY) possess highly conserved WD repeats but a less well conserved C-terminal region containing Pro–Pro–Leu–Pro (PPLP) motifs. In Arabidopsis, FCA limits its own production by promoting the polyadenylation of FCA pre-mRNA within intron 3 to form a truncated transcript called FCA-β. The identification of FCA-β transcripts in rice and ryegrass indicates that equivalent mechanisms occur in monocots. FCA’s autoregulation and flowering time functions require FCA to interact with the 3′ end-processing factor, FY. The FCA WW domain from Arabidopsis, which is thought to recognise PPLP motifs, interacted with ryegrass FY protein in GST-pulldown assays. Together these results suggest that the FCA and FY genes in monocots have similar functions to the dicot flowering-time genes. The cloning of these genes may provide targets for manipulating the flowering time of monocot species.


Genetics ◽  
2007 ◽  
Vol 177 (1) ◽  
pp. 535-547 ◽  
Author(s):  
Leif Skøt ◽  
Jan Humphreys ◽  
Mervyn O. Humphreys ◽  
Danny Thorogood ◽  
Joe Gallagher ◽  
...  

2020 ◽  
Vol 10 (9) ◽  
pp. 3347-3364 ◽  
Author(s):  
Thomas Keep ◽  
Jean-Paul Sampoux ◽  
José Luis Blanco-Pastor ◽  
Klaus J Dehmer ◽  
Matthew J Hegarty ◽  
...  

Abstract The natural genetic diversity of agricultural species is an essential genetic resource for breeding programs aiming to improve their ecosystem and production services. A large natural ecotype diversity is usually available for most grassland species. This could be used to recombine natural climatic adaptations and agronomic value to create improved populations of grassland species adapted to future regional climates. However describing natural genetic resources can be long and costly. Molecular markers may provide useful information to help this task. This opportunity was investigated for Lolium perenne L., using a set of 385 accessions from the natural diversity of this species collected right across Europe and provided by genebanks of several countries. For each of these populations, genotyping provided the allele frequencies of 189,781 SNP markers. GWAS were implemented for over 30 agronomic and/or putatively adaptive traits recorded in three climatically contrasted locations (France, Belgium, Germany). Significant associations were detected for hundreds of markers despite a strong confounding effect of the genetic background; most of them pertained to phenology traits. It is likely that genetic variability in these traits has had an important contribution to environmental adaptation and ecotype differentiation. Genomic prediction models calibrated using natural diversity were found to be highly effective to describe natural populations for almost all traits as well as commercial synthetic populations for some important traits such as disease resistance, spring growth or phenological traits. These results will certainly be valuable information to help the use of natural genetic resources of other species.


Author(s):  
Gražina Statkevičiūtė ◽  
Andrius Aleliūnas ◽  
Vilma Kemešytė ◽  
Izolda Pašakinskienė ◽  
Gintaras Brazauskas

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