The chloroplast genome of mulberry: complete nucleotide sequence, gene organization and comparative analysis

2006 ◽  
Vol 3 (1) ◽  
pp. 49-59 ◽  
Author(s):  
V. Ravi ◽  
Jitendra P. Khurana ◽  
Akhilesh K. Tyagi ◽  
Paramjit Khurana
1986 ◽  
Vol 5 (9) ◽  
pp. 2043-2049 ◽  
Author(s):  
K. Shinozaki ◽  
M. Ohme ◽  
M. Tanaka ◽  
T. Wakasugi ◽  
N. Hayashida ◽  
...  

2009 ◽  
Vol 6 (1) ◽  
pp. 143 ◽  
Author(s):  
Alongkorn Amonsin ◽  
Roongtham Kedkovid ◽  
Suphasawatt Puranaveja ◽  
Piya Wongyanin ◽  
Sanipa Suradhat ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Wei Tan ◽  
Han Gao ◽  
Weiling Jiang ◽  
Huanyu Zhang ◽  
Xiaolei Yu ◽  
...  

Abstract Chloroplast genomes have been widely considered an informative and valuable resource for molecular marker development and phylogenetic reconstruction in plant species. This study evaluated the complete chloroplast genomes of the traditional Chinese medicine Gleditsia sinensis and G. japonica, an adulterant of the former. The complete chloroplast genomes of G. sinensis and G. japonica were found to be of sizes 163,175 bp and 162,391 bp, respectively. A total of 111 genes were identified in each chloroplast genome, including 77 coding sequences, 30 tRNA, and 4 rRNA genes. Comparative analysis demonstrated that the chloroplast genomes of these two species were highly conserved in genome size, GC contents, and gene organization. Additionally, nucleotide diversity analysis of the two chloroplast genomes revealed that the two short regions of ycf1b were highly diverse, and could be treated as mini-barcode candidate regions. The mini-barcode of primers ZJ818F-1038R was proven to precisely discriminate between these two species and reflect their biomass ratio accurately. Overall, the findings of our study will shed light on the genetic evolution and guide species identification of G. sinensis and G. japonica.


2019 ◽  
Vol 26 (1) ◽  
pp. 106-117 ◽  
Author(s):  
M. Ajmal Ali

The order Caryophyllales exhibit diverse diversity in morphology to molecules, which leads to taxonomic complexities in circumscribing especially to its families. The comparative analysis of the available chloroplast genome to detect pattern of genomic arrangement and variation is lacking; hence, the alignment pattern and genomic rearrangement across the Caryophyllales were detected, and the phylogenetic relationship among the families of the Caryophyllales based on maximum cp genes were inferred. The comparison of the Caryophyllales cp genomes based on representatives of 10 families with Taxillus chinensis as reference genome revealed that coding region were more conserved than the non-coding region; however, clpP, rpl16 and ycf15 were the most divergent coding region among all taxa. Further, the genomic rearrangement occurred in gene organization of the taxa among different families of Caryophyllales, the extensive rearrangement were observed in Amaranthaceae, Caryophyllaceae, Chenopodiaceae,Droseraceae and Cactaceae.


Gene ◽  
1989 ◽  
Vol 75 (2) ◽  
pp. 271-288 ◽  
Author(s):  
Peter Scholz ◽  
Volker Haring ◽  
Brigitte Wittmann-Liebold ◽  
Keith Ashman ◽  
Michael Bagdasarian ◽  
...  

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