A new quantitative structure-retention relationship model for predicting chromatographic retention time of oligonucleotides

2011 ◽  
Vol 54 (7) ◽  
pp. 1064-1071 ◽  
Author(s):  
Wei Zhao ◽  
GuiZhao Liang ◽  
YuZhen Chen ◽  
Li Yang
2020 ◽  
Vol 85 (1) ◽  
pp. 9-23
Author(s):  
Branimir Pavlic ◽  
Nemanja Teslic ◽  
Predrag Kojic ◽  
Lato Pezo

This work aimed to obtain a validated model for prediction of retention time of terpenoids isolated from sage herbal dust using supercritical fluid extraction. In total 32 experimentally obtained retention time of terpenes, which were separated and detected by GC?MS were further used to build a prediction model. The quantitative structure?retention relationship was employed to predict the retention time of essential oil compounds obtained in GC?MS analysis, using six molecular descriptors selected by a genetic algorithm. The selected descriptors were used as inputs of an artificial neural network, to build a retention time predictive quantitative structure?retention relationship model. The coefficient of determination for training cycle was 0.837, indicating that this model could be used for prediction of retention time values for essential oil compounds in sage herbal dust extracts obtained by supercritical fluid extraction due to low prediction error and moderately high r2. Results suggested that a 2D autocorrelation descriptor AATS0v was the most influential parameter with an approximately relative importance of 25.1 %.


2010 ◽  
Vol 93 (6) ◽  
pp. 1703-1714 ◽  
Author(s):  
Bogusaw Buszewski ◽  
Monika Michel

Abstract Crop models use mathematical equations to simulate the physical and chemical processes that generally control the uptake, translocation, and sorption of pesticides in all parts of plants. Our interest is focused on method optimization to determine the new compounds using stationary and mobile phases with different physicochemical properties. The work deals with five fungicides composed of nitrogen-containing heterocycles, 1,2,4-triazoles. The sample preparation liquid extraction and solid-phase-based methods are used to determine and model the pesticide residues in plants organisms. Analysis of these compounds is generally carried out by GC or HPLC coupled to different detectors, especially to mass spectrometers, in hyphenated techniques that have been extremely developed in recent years. The relationships between the chromatographic retention factor (k) and those physicochemical properties that are relevant in quantitative structure-retention relationship (QSRR) studies were investigated. The accuracy of the simple linear regressions between the chromatographic retention and the descriptors for all of the compounds was satisfactory (correlation coefficient 0.83 ≥ R2 ≥ 0.99). The QSRR models of these nitrogen-containing heterocyclic compounds could be predicted with a multiple linear regression equation having the statistical index R2 = 1.00. Evaluation of chromatographic properties of the new stationary phases and description of the molecular separation mechanism using the QSRR method, including molecular modeling, were performed. A universal model is presented that links the physicochemical parameters describing the fungicide compounds with the anatomical, physiological, and biochemical properties of the plant.


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