Comparative genomic analysis of pyrene-degrading Mycobacterium species: Genomic islands and ring-hydroxylating dioxygenases involved in pyrene degradation

2018 ◽  
Vol 56 (11) ◽  
pp. 798-804 ◽  
Author(s):  
Dae-Wi Kim ◽  
Kihyun Lee ◽  
Do-Hoon Lee ◽  
Chang-Jun Cha
Keyword(s):  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Genomic Islands ◽  
Comparative Genomic ◽  
Mycobacterium Species ◽  
Pyrene Degradation

scholarly journals Comparative Genomic Analysis Reveals a Possible Novel Non-Tuberculous Mycobacterium Species with High Pathogenic Potential

PLoS ONE ◽  
2016 ◽  
Vol 11 (4) ◽  
pp. e0150413 ◽  
Author(s):  
Siew Woh Choo ◽  
Avirup Dutta ◽  
Guat Jah Wong ◽  
Wei Yee Wee ◽  
Mia Yang Ang ◽  
...  
Keyword(s):  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Comparative Genomic ◽  
Mycobacterium Species ◽  
Pathogenic Potential ◽  
High Pathogenic

scholarly journals Comparative Genomic Analysis of Rhodococcus equi: An Insight into Genomic Diversity and Genome Evolution

2019 ◽  
Vol 2019 ◽  
pp. 1-14
Author(s):  
Jianchao Ying ◽  
Jun Ye ◽  
Teng Xu ◽  
Qian Wang ◽  
Qiyu Bao ◽  
...  
Keyword(s):  
Core Genome ◽  
Genomic Analysis ◽  
Rhodococcus Equi ◽  
Comparative Genomic Analysis ◽  
Genomic Islands ◽  
Genomic Diversity ◽  
Comparative Genomic ◽  
Niche Adaptation ◽  
Genomic Studies ◽  
Insight Into

Rhodococcus equi, a member of the Rhodococcus genus, is a gram-positive pathogenic bacterium. Rhodococcus possesses an open pan-genome that constitutes the basis of its high genomic diversity and allows for adaptation to specific niche conditions and the changing host environments. Our analysis further showed that the core genome of R. equi contributes to the pathogenicity and niche adaptation of R. equi. Comparative genomic analysis revealed that the genomes of R. equi shared identical collinearity relationship, and heterogeneity was mainly acquired by means of genomic islands and prophages. Moreover, genomic islands in R. equi were always involved in virulence, resistance, or niche adaptation and possibly working with prophages to cause the majority of genome expansion. These findings provide an insight into the genomic diversity, evolution, and structural variation of R. equi and a valuable resource for functional genomic studies.

scholarly journals A large scale comparative genomic analysis reveals insertion sites for newly acquired genomic islands in bacterial genomes

2011 ◽  
Vol 11 (1) ◽  
pp. 135 ◽  
Author(s):  
Pengcheng Du ◽  
Yinxue Yang ◽  
Haiying Wang ◽  
Di Liu ◽  
George F Gao ◽  
...  
Keyword(s):  
Large Scale ◽  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Genomic Islands ◽  
Comparative Genomic ◽  
Bacterial Genomes ◽  
Insertion Sites

scholarly journals Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis

2010 ◽  
pp. no-no ◽  
Author(s):  
Elisa Taviani ◽  
Christopher J. Grim ◽  
Jinna Choi ◽  
Jongsik Chun ◽  
Bradd Haley ◽  
...  
Keyword(s):  
Vibrio Cholerae ◽  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Genomic Islands ◽  
Comparative Genomic

scholarly journals Comparative genomic analysis demonstrates that true reinfection following SARS-CoV-2 infection is possible

2021 ◽  
pp. 100015
Author(s):  
Eamon O. Murchu ◽  
Sinead O'Neill ◽  
Paula Byrne ◽  
Cillian De Gascun ◽  
Michelle O'Neill ◽  
...  
Keyword(s):  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Comparative Genomic
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