scholarly journals Identification of stable reference gene for transcript normalization in black pepper-Phytophthora capsici pathosystem

2019 ◽  
Vol 25 (4) ◽  
pp. 945-952 ◽  
Author(s):  
P. Umadevi ◽  
E. J. Suraby ◽  
M. Anandaraj ◽  
T. Nepolean
2016 ◽  
Vol 5 (1) ◽  
pp. 1
Author(s):  
Rita Noveriza ◽  
Tricita H. Quimio

Foot rot disease of black pepper caused by Phytophthora capsici had been reported in Batangas and Laguna, Philippines. The plant was recovered following the application of crop residue (organic substrate) and intercropping with other crops. This study was aimed to isolate, identify, and determine the soil mycoflora from the rhizosphere of black pepper grown on various cropping patterns in Batangas and Laguna. Antagonistic activity of mycoflora isolates was tested against P. capsici using dual culture technique. The result showed that 149 colonies of soil mycoflora isolated were belonging to 14 genera; three of them, i.e. Penicillium, Paecilomyces and Aspergillus, were the most dominant. All of the mycoflora isolates were able to inhibit the growth of the pathogen. Eighteen of them were the most promising antagonists, based on their inhibition growth of more than 60%. It is suggested that antagonistic mechanism of Mucor isolate (1001), Trichoderma (125, 170, 171, 179, 180, 181), Gliocladium (109), Cunninghamella (165, 168), Mortierella (177), and Aspergillus (106) was space competitor (competition for nutrient) since they rapidly overgrew the pathogen. Aspergillus (67, 79, 81, 83, 108, and 202) isolates inhibited the pathogen apparently by producing antibiotic, whereas Trichoderma (125, 170, 171, 179, 180, and 181) isolates were able to penetrate the hyphae of the pathogen. The organic matter percentage in the soil was significantly correlated with the number of antagonistic mycoflora in rhizosphere (R2 = 0.1094), but the cropping pattern was negatively correlated. This study suggests that organic matter increased antagonistic mycoflora in black pepper rhizosphere, which will reduce severity of the disease.


2020 ◽  
Author(s):  
Divya Kattupalli ◽  
Asha Sriniva ◽  
Soniya E V

Abstract Background: Black pepper is a prominent spice which is an indispensable ingredient in culinary and traditional medicine. Phytophthora capsici, the causative agent of foot rot disease causes drastic constraint in black pepper cultivation and productivity. To counterattack various biotic and abiotic stresses plants employ a broad array of mechanisms one such includes the accumulation of pathogenesis-related (PR) proteins. Several studies have reported the role of PR-1 proteins in triggering the plant defenses during plant-oomycete interaction.Results: Through the genome-wide survey, eleven PR-1 genes that belongs to a CAP superfamily protein with Caveolin-Binding Motif (CBM) and CAP-derived peptide (CAPE) were identified from P. nigrum. Despite the critical functional domains, PnPR1 homologs differ in their signal peptide motifs, and core amino acid sequence composition in the functional protein domains. The GO, biological function analysis reveals their role in defense responses and response to biotic stimulus whereas the KEGG functional annotation predicted their function in the plant-pathogen interactions. Furthermore, transcriptome-assisted FPKM analysis revealed PnPR-1 genes mapped to P. nigrum - P. capsici interaction pathway. The differentially expressed pathogen-responsive PR-1 gene was validated through qRT-PCR. Subsequent analysis revealed the structural details, phylogenetic relationships, conserved sequence motifs and critical cis-regulatory elements of PnPR-1 genes.Conclusion: This is the first genome-wide study that identified the role of PR-1 genes during P. nigrum - P. capsici interactions. The detailed in silico experimental analysis revealed the vital role of PnPR-1 genes in regulating the first layer of defense towards P. capsici infection in Panniyur-1 plants.


2018 ◽  
Vol 71 (4) ◽  
pp. 495-503
Author(s):  
Anandaraj Muthuswamy ◽  
Vinitha Kakkattil Balakrishnan ◽  
Umadevi Palaniyandi ◽  
Monica V. Chandran

2016 ◽  
Vol 44 (2) ◽  
Author(s):  
K.B. Vinitha, M. Anandaraj and R. Suseela Bhai

<p>Foot rot disease caused by <em>Phytophthora capsici</em> in black pepper is the most destructive disease. A total of 82 isolates from the National Repository of <em>Phytophthora</em> at ICAR-Indian Institute of Spices Research were evaluated for their sensitivity to metalaxylmancozeb and also tested for their virulence. Of the 82 isolates studied, 19 (23.2%) were highly sensitive to metalaxyl-mancozeb and six (7.3%) were comparatively insensitive (EC<sub>90</sub> value &gt;40 ppm; range 41.3 to 68.5 ppm). The isolates also varied in the degree of virulence, viz., 34 (41.5%) were highly virulent, 39 (47.6%) moderately virulent, 4 (3.7%) mildly virulent, and 5 (6.1%) non-virulent. There was neither any significant correlation between sensitivity to metalaxyl-mancozeb and virulence nor with the geographical location<strong>. </strong></p>


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