Evaluation of RNA amplification method for high-density DNA microarray

2010 ◽  
Vol 4 (1) ◽  
pp. 70-74 ◽  
Author(s):  
Sun Woo Hong ◽  
Jae Wook Yoo ◽  
Hojun Kim ◽  
Songhee Jeon ◽  
Shambhunath Bose ◽  
...  
2004 ◽  
Vol 331 (2) ◽  
pp. 314-321 ◽  
Author(s):  
Catherine I Dumur ◽  
Carleton T Garrett ◽  
Kellie J Archer ◽  
Suhail Nasim ◽  
David S Wilkinson ◽  
...  

Author(s):  
Mohammad Shabanpour ◽  
Yahya Ehteshaminia ◽  
Shayan Poyandeh ◽  
Seif Ali Mahdavi

Introduction: Toxoplasmosis is a worldwide disease caused by an intracellular protozoan called Toxoplasma gondii and in mothers who become infected during pregnancy, it can cause serious damage to the fetus by passing through the placenta. The aim of this study was to review the effectiveness of the NASBA molecular technique in diagnosing the acute form of Toxoplasmosis in pregnant mothers.  Material and Methods: In this study, the websites of PubMed, Google Scholar, SID, Magiran, Web of Science, IranDoc were searched and articles related to the title have been reviewed from 1990 to 2020.    Results: Nucleic Acid Sequence-Based Amplification (NASBA) is an isothermal method that has the processes of nucleic acid extraction, amplification, and identification of amplified products. This technique is based on transcription and is specifically used for RNA amplification, so it is highly specific in identifying living and active microorganisms. All steps in this amplification method are performed at 41 °C and the amplified products can be identified by appropriate detection methods such as electrochemical luminescence (ECL). Conclusion: Since all steps of amplification are performed by NASBA at the same temperature of 41°C, unlike molecular PCR technique, a thermocycler is not required, so setting it up will not cost much for laboratories and it can be useful in providing a suitable solution for toxoplasmosis screening in pregnant mothers.


2006 ◽  
Vol 73 (2) ◽  
pp. 563-571 ◽  
Author(s):  
Haichun Gao ◽  
Zamin K. Yang ◽  
Terry J. Gentry ◽  
Liyou Wu ◽  
Christopher W. Schadt ◽  
...  

ABSTRACT A new approach, termed whole-community RNA amplification (WCRA), was developed to provide sufficient amounts of mRNAs from environmental samples for microarray analysis. This method employs fusion primers (six to nine random nucleotides with an attached T7 promoter) for the first-strand synthesis. The shortest primer (T7N6S) gave the best results in terms of the yield and representativeness of amplification. About 1,200- to 1,800-fold amplification was obtained with amounts of the RNA templates ranging from 10 to 100 ng, and very representative detection was obtained with 50 to 100 ng total RNA. Evaluation with a Shewanella oneidensis Δfur strain revealed that the amplification method which we developed could preserve the original abundance relationships of mRNAs. In addition, to determine whether representative detection of RNAs can be achieved with mixed community samples, amplification biases were evaluated with a mixture containing equal quantities of RNAs (100 ng each) from four bacterial species, and representative amplification was also obtained. Finally, the method which we developed was applied to the active microbial populations in a denitrifying fluidized bed reactor used for denitrification of contaminated groundwater and ethanol-stimulated groundwater samples for uranium reduction. The genes expressed were consistent with the expected functions of the bioreactor and groundwater system, suggesting that this approach is useful for analyzing the functional activities of microbial communities. This is one of the first demonstrations that microarray-based technology can be used to successfully detect the activities of microbial communities from real environmental samples in a high-throughput fashion.


Author(s):  
Susheela Pillarisetty ◽  
Alan Dafforn ◽  
Steve Wang ◽  
Reshma Purohit ◽  
Dawn Iglehart ◽  
...  

BMC Genomics ◽  
2009 ◽  
Vol 10 (1) ◽  
pp. 35 ◽  
Author(s):  
Soken Tsuchiya ◽  
Yuki Tachida ◽  
Eri Segi-Nishida ◽  
Yasushi Okuno ◽  
Shigero Tamba ◽  
...  

2010 ◽  
Vol 87 (1) ◽  
pp. 343-352 ◽  
Author(s):  
Feng-Lin Cao ◽  
Han-Hua Liu ◽  
Ya-Hui Wang ◽  
Yu Liu ◽  
Xiao-Yu Zhang ◽  
...  

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