Standard Alignment

2007 ◽  
pp. 138-174
Author(s):  
C BROOKS
Keyword(s):  
Standard Alignment

scholarly journals Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

2006 ◽  
Vol 72 (7) ◽  
pp. 5069-5072 ◽  
Author(s):  
T. Z. DeSantis ◽  
P. Hugenholtz ◽  
N. Larsen ◽  
M. Rojas ◽  
E. L. Brodie ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Taxonomic Classification ◽  
Rrna Gene ◽  
Link Type ◽  
Gene Database ◽  
Public Repositories ◽  
Environmental Sequences ◽  
Standard Alignment

ABSTRACT A 16S rRNA gene database (http://greengenes.lbl.gov ) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent taxonomic nomenclature among curators even at the phylum level. Putative chimeras were identified in 3% of environmental sequences and in 0.2% of records derived from isolates. Environmental sequences were classified into 100 phylum-level lineages in the Archaea and Bacteria.

scholarly journals Decoupling alignment strategy from feature quantification using a standard alignment incidence data structure

2021 ◽  
Author(s):  
Kwangbom Choi ◽  
Matthew J. Vincent ◽  
Gary A. Churchill
Keyword(s):  
Gene Expression ◽  
Data Structure ◽  
Genomic Feature ◽  
File Format ◽  
Read Alignment ◽  
Incidence Data ◽  
Link Type ◽  
Generic Data ◽  
Alignment Strategy ◽  
Standard Alignment

AbstractSummaryThe abundance of genomic feature such as gene expression is often estimated from observed total number of alignment incidences in the targeted genome regions. We introduce a generic data structure and associated file format for alignment incidence data so that method developers can create novel pipelines comprising models, each optimal for read alignment, post-alignment QC, and quantification across multiple sequencing modalities.Availability and Implementationalntools software is freely available at https://github.com/churchill-lab/alntools under MIT [email protected] or [email protected]

Instructional Plans: Grades 3–5

2021 ◽  
pp. 81-110
Author(s):  
Shawna Longo
Keyword(s):  
Grade Level ◽  
Musical Instruments ◽  
Recycled Materials ◽  
Instructional Procedures ◽  
Instructional Plans ◽  
Standard Alignment

Chapter 6 presents three instructional plans that are geared toward grades 3–5. Instructional plans consist of planning necessities, standard alignment, alignment to philosophies approached in earlier chapters, as well as instructional procedures and assessments. Adaptations for other grade-level bands as well as potential extensions are available for each plan. This chapter includes the following instructional plans: Invent an Instrument Using Recycled Materials, Composing Using Light: Musical Automata, and Performing Music Using Light: Theremins and Oscillators. During Invent an Instrument Using Recycled Materials, students will design and build an instrument that they can use in performance. In Composing Using Light: Musical Automata, students will use the concepts of transferring energy and photosensitive circuits to compose a piece of music. In Performing Music Using Light: Theremins and Oscillators, students will use concepts such as voltage, resistance, and oscillation, to create their own electronic musical instruments that change pitch depending on exposure to light.

Standard Alignment Tape Recorder for EIAJ Type I Videotape Recorder

1974 ◽  
Vol 83 (11) ◽  
pp. 901-904 ◽  
Author(s):  
Hiroshi Sugaya ◽  
Masahiro Deguchi ◽  
Hiroshi Taniguchi ◽  
Taketoshi Yonezawa
Keyword(s):  
Tape Recorder ◽  
Type I ◽  
Videotape Recorder ◽  
Standard Alignment

Instructional Plans: Grades K–2

2021 ◽  
pp. 51-80
Author(s):  
Shawna Longo
Keyword(s):  
Grade Level ◽  
Sound Waves ◽  
Mathematical Relationship ◽  
Instructional Procedures ◽  
Sound Amplification ◽  
Available Technology ◽  
Instructional Plans ◽  
Electric Guitars ◽  
Standard Alignment

Chapter 5 presents three instructional plans that are geared toward grades K–2. Instructional plans consist of planning necessities, standard alignment, alignment to philosophies approached in earlier chapters, as well as instructional procedures and assessments. Adaptations for other grade-level bands as well as potential extensions are available for each plan. This chapter includes the following instructional plans: Shapes of Electric Guitars, Sound Amplification and Speaker Building, and Measuring Length and Pitch. In Shapes of Electric Guitars, students will design guitar bodies and perform on them using available technology. In Sound Amplification, students will analyze and experiment with sound waves, eventually building their own small speaker. In Measuring Length and Pitch, students will measure pitched tubes to determine the mathematical relationship between pitches.

Instructional Plans: Grades 9–12

2021 ◽  
pp. 158-198
Author(s):  
Shawna Longo
Keyword(s):  
Grade Level ◽  
Sound Quality ◽  
Audio Engineering ◽  
Instructional Procedures ◽  
Instructional Plans ◽  
Standard Alignment

Instructional plans consist of planning necessities, standard alignment, alignment to philosophies approached in earlier chapters, as well as instructional procedures and assessments. Adaptations for other grade-level bands as well as potential extensions are available for each plan. This chapter includes the following instructional plans: Audio Engineering: Ratios in Recording, Designing a Chromatic PVC Instrument, Controlled Voltage: Composing, Performing, and Improvising with Subtractive Electronic Synthesis, and Sound Pollution and Its Effects on Local Bird Ecology. In Audio Engineering: Ratios in Recording, students will use a method of measuring and experimentation to maximize the sound quality of a given recording environment. In Designing a Chromatic PVC Instrument, students will design a one octave chromatic instrument using mathematical calculations and representations to create initial expressive statements and explain the relationships among the frequency, wavelength, and speed of waves traveling in the PVC pipes. In Controlled Voltage: Composing, Performing, and Improvising with Subtractive Electronic Synthesis, students will interface with the subtractive architecture of electronic instruments, the concept of controlled voltage, and the function of an electronic sequencer. In Sound Pollution and Its Effects on Local Bird Ecology, students will learn about modern sound pollution and the effect it has on many different forms of ecology. Students will determine at the end of their own study whether or not there were any observed correlations between these datas captured, and if other data could be used to claim causation.

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