scholarly journals Signal Detection in Pharmacovigilance: A Review of Informatics-driven Approaches for the Discovery of Drug-Drug Interaction Signals in Different Data Sources

Author(s):  
Heba Ibrahim ◽  
A. Abdo ◽  
Ahmed M. El Kerdawy ◽  
A. Sharaf Eldin
Author(s):  
Brian Zylich ◽  
Brian McCarthy ◽  
Andrew Schade ◽  
Huy Tran ◽  
Xiao Qin ◽  
...  

2020 ◽  
Vol 14 (1) ◽  
pp. 4
Author(s):  
Yoshihiro Noguchi ◽  
Keisuke Aoyama ◽  
Satoaki Kubo ◽  
Tomoya Tachi ◽  
Hitomi Teramachi

There is a current demand for “safety signal” screening, not only for single drugs but also for drug-drug interactions. The detection of drug-drug interaction signals using the proportional reporting ratio (PRR) has been reported, such as through using the combination risk ratio (CRR). However, the CRR does not consider the overlap between the lower limit of the 95% confidence interval of the PRR of concomitant-use drugs and the upper limit of the 95% confidence interval of the PRR of single drugs. In this study, we proposed the concomitant signal score (CSS), with the improved detection criteria, to overcome the issues associated with the CRR. “Hypothetical” true data were generated through a combination of signals detected using three detection algorithms. The signal detection accuracy of the analytical model under investigation was verified using machine learning indicators. The CSS presented improved signal detection when the number of reports was ≥3, with respect to the following metrics: accuracy (CRR: 0.752 → CSS: 0.817), Youden’s index (CRR: 0.555 → CSS: 0.661), and F-measure (CRR: 0.780 → CSS: 0.820). The proposed model significantly improved the accuracy of signal detection for drug-drug interactions using the PRR.


Drug Safety ◽  
2020 ◽  
Vol 43 (7) ◽  
pp. 657-660 ◽  
Author(s):  
Jean-Louis Montastruc ◽  
Pierre-Louis Toutain

Drug Safety ◽  
2020 ◽  
Vol 43 (8) ◽  
pp. 775-785
Author(s):  
Sara Hult ◽  
Daniele Sartori ◽  
Tomas Bergvall ◽  
Sara Hedfors Vidlin ◽  
Birgitta Grundmark ◽  
...  

Pharmaceutics ◽  
2020 ◽  
Vol 12 (8) ◽  
pp. 762 ◽  
Author(s):  
Yoshihiro Noguchi ◽  
Tomoya Tachi ◽  
Hitomi Teramachi

Many patients require multi-drug combinations, and adverse event profiles reflect not only the effects of individual drugs but also drug–drug interactions. Although there are several algorithms for detecting drug–drug interaction signals, a simple analysis model is required for early detection of adverse events. Recently, there have been reports of detecting signals of drug–drug interactions using subset analysis, but appropriate detection criterion may not have been used. In this study, we presented and verified an appropriate criterion. The data source used was the Japanese Adverse Drug Event Report (JADER) database; “hypothetical” true data were generated through a combination of signals detected by three detection algorithms. The accuracy of the signal detection of the analytic model under investigation was verified using indicators used in machine learning. The newly proposed subset analysis confirmed that the signal detection was improved, compared with signal detection in the previous subset analysis, on the basis of the indicators of Accuracy (0.584 to 0.809), Precision (= Positive predictive value; PPV) (0.302 to 0.596), Specificity (0.583 to 0.878), Youden’s index (0.170 to 0.465), F-measure (0.399 to 0.592), and Negative predictive value (NPV) (0.821 to 0.874). The previous subset analysis detected many false drug–drug interaction signals. Although the newly proposed subset analysis provides slightly lower detection accuracy for drug–drug interaction signals compared to signals compared to the Ω shrinkage measure model, the criteria used in the newly subset analysis significantly reduced the amount of falsely detected signals found in the previous subset analysis.


2021 ◽  
Author(s):  
Shichao Liu ◽  
Yang Zhang ◽  
Yuxin Cui ◽  
Yang Qiu ◽  
Yifan Deng ◽  
...  

AbstractDrug-drug interactions are one of the main concerns in drug discovery. Accurate prediction of drug-drug interactions plays a key role in increasing the efficiency of drug research and safety when multiple drugs are c o-prescribed. With various data sources that describe the relationships and properties between drugs, the comprehensive approach that integrates multiple data sources would be considerably effective in making high-accuracy prediction. In this paper, we propose a Deep Attention Neural Network based Drug-Drug Interaction prediction framework, abbreviated as DANN-DDI, to predict unobserved drug-drug interactions. First, we construct multiple drug feature networks and learn drug representations from these networks using the graph embedding method; then, we concatenate the learned drug embeddings and design an attention neural network to learn representations of drug-drug pairs; finally, we adopt a deep neural network to accurately predict drug-drug interactions. The experimental results demonstrate that our model DANN-DDI has improved prediction performance compared with state-of-the-art methods. Moreover, the proposed model can predict novel drug-drug interactions and drug-drug interaction-associated events.


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