Formation of amyloid fibrils by bovine carbonic anhydrase

2008 ◽  
Vol 1784 (6) ◽  
pp. 930-935 ◽  
Author(s):  
Anshul Rana ◽  
Teemish Praveen Gupta ◽  
Saurabh Bansal ◽  
Bishwajit Kundu
Biomolecules ◽  
2021 ◽  
Vol 11 (11) ◽  
pp. 1608
Author(s):  
Victor Marchenkov ◽  
Natalya Ryabova ◽  
Vitaly Balobanov ◽  
Anatoly Glukhov ◽  
Nelly Ilyina ◽  
...  

The development of many severe human diseases is associated with the formation of amyloid fibrils. Most of the available information on the process of amyloid formation has been obtained from studies of small proteins and peptides, wherein the features of complex proteins’ aggregation remain insufficiently investigated. Our work aimed to research the amyloid aggregation of a large model protein, bovine carbonic anhydrase B (BCAB). It has previously been demonstrated that, when exposed to an acidic pH and elevated temperature, this protein forms amyloid fibrils. Here, we show that, under these conditions and before amyloid formation, BCAB undergoes fragmentation by acid hydrolysis to give free individual peptides and associated peptides. Fragments in associates contain a pronounced secondary structure and act as the main precursor of amyloid fibrils, wherein free peptides adopt mostly unstructured conformation and form predominantly irregular globular aggregates. Reduced acidity decreases the extent of acid hydrolysis, causing BCAB to form amorphous aggregates lacking the thioflavin T binding β-structure. The presented results provide new information on BCAB amyloid formation and show the importance of protein integrity control when working even in mildly acidic conditions.


1978 ◽  
Vol 100 (15) ◽  
pp. 4873-4877 ◽  
Author(s):  
I. Bertini ◽  
G. Canti ◽  
C. Luchinat ◽  
A. Scozzafava

2008 ◽  
Vol 190 (9) ◽  
pp. 3344-3352 ◽  
Author(s):  
Dibyendu Samanta ◽  
Debashis Mukhopadhyay ◽  
Saheli Chowdhury ◽  
Jaydip Ghosh ◽  
Saumen Pal ◽  
...  

ABSTRACT The peptidyl transferase center, present in domain V of 23S rRNA of eubacteria and large rRNA of plants and animals, can act as a general protein folding modulator. Here we show that a few specific nucleotides in Escherichia coli domain V RNA bind to unfolded proteins and, as shown previously, bring the trapped proteins to a folding-competent state before releasing them. These nucleotides are the same for the proteins studied so far: bovine carbonic anhydrase, lactate dehydrogenase, malate dehydrogenase, and chicken egg white lysozyme. The amino acids that interact with these nucleotides are also found to be specific in the two cases tested: bovine carbonic anhydrase and lysozyme. They are either neutral or positively charged and are present in random coils on the surface of the crystal structure of both the proteins. In fact, two of these amino acid-nucleotide pairs are identical in the two cases. How these features might help the process of protein folding is discussed.


1990 ◽  
Vol 213 (3) ◽  
pp. 561-568 ◽  
Author(s):  
G.V. Semisotnov ◽  
V.N. Uversky ◽  
I.V. Sokolovsky ◽  
A.M. Gutin ◽  
O.I. Razgulyaev ◽  
...  

2006 ◽  
Vol 4 ◽  
pp. 552-558 ◽  
Author(s):  
Katsunori Tagami ◽  
Masaru Tsukada ◽  
Rehana Afrin ◽  
Hiroshi Sekiguchi ◽  
Atsushi Ikai

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