scholarly journals The E2-25K ubiquitin-associated (UBA) domain aids in polyubiquitin chain synthesis and linkage specificity

2011 ◽  
Vol 405 (4) ◽  
pp. 662-666 ◽  
Author(s):  
Randall C. Wilson ◽  
Stephen P. Edmondson ◽  
Justin W. Flatt ◽  
Kimberli Helms ◽  
Pamela D. Twigg
2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Zhiyuan You ◽  
Wen-Xue Jiang ◽  
Ling-Yun Qin ◽  
Zhou Gong ◽  
Wei Wan ◽  
...  

AbstractAutophagy receptor p62/SQSTM1 promotes the assembly and removal of ubiquitylated proteins by forming p62 bodies and mediating their encapsulation in autophagosomes. Here we show that under nutrient-deficient conditions, cellular p62 specifically undergoes acetylation, which is required for the formation and subsequent autophagic clearance of p62 bodies. We identify K420 and K435 in the UBA domain as the main acetylation sites, and TIP60 and HDAC6 as the acetyltransferase and deacetylase. Mechanically, acetylation at both K420 and K435 sites enhances p62 binding to ubiquitin by disrupting UBA dimerization, while K435 acetylation also directly increases the UBA-ubiquitin affinity. Furthermore, we show that acetylation of p62 facilitates polyubiquitin chain-induced p62 phase separation. Our results suggest an essential role of p62 acetylation in the selective degradation of ubiquitylated proteins in cells under nutrient stress, by specifically regulating the assembly of p62 bodies.


2005 ◽  
Vol 18 (6) ◽  
pp. 687-698 ◽  
Author(s):  
Ranjani Varadan ◽  
Michael Assfalg ◽  
Shahri Raasi ◽  
Cecile Pickart ◽  
David Fushman

2005 ◽  
Vol 24 (18) ◽  
pp. 3178-3189 ◽  
Author(s):  
Jean-François Trempe ◽  
Nicholas R Brown ◽  
Edward D Lowe ◽  
Colin Gordon ◽  
Iain D Campbell ◽  
...  

Biochemistry ◽  
1998 ◽  
Vol 37 (27) ◽  
pp. 9784-9792 ◽  
Author(s):  
Lucy D. Mastrandrea ◽  
Eileen M. Kasperek ◽  
Edward G. Niles ◽  
Cecile M. Pickart

Author(s):  
Mark A. Nakasone ◽  
Karolina A. Majorek ◽  
Mads Gabrielsen ◽  
Gary J. Sibbet ◽  
Brian O. Smith ◽  
...  

AbstractUbiquitin (Ub) chain types govern distinct biological processes. K48-linked polyUb chains target substrates for proteasomal degradation, but the mechanism of Ub chain synthesis remains elusive due to the transient nature of Ub handover. Here, we present the structure of a chemically trapped complex of the E2 UBE2K covalently linked to donor Ub and acceptor K48-linked di-Ub, primed for K48-linked Ub chain synthesis by a RING E3. The structure reveals the basis for acceptor Ub recognition by UBE2K active site residues and the C-terminal Ub-associated (UBA) domain, to impart K48-linked Ub specificity and catalysis. Furthermore, the structure unveils multiple Ub-binding surfaces on the UBA domain that allow distinct binding modes for K48- and K63-linked Ub chains. This multivalent Ub-binding feature serves to recruit UBE2K to ubiquitinated substrates to overcome weak acceptor Ub affinity and thereby promote chain elongation. These findings elucidate the mechanism of processive K48-linked polyUb chain formation by UBE2K.


2004 ◽  
Vol 24 (18) ◽  
pp. 8055-8068 ◽  
Author(s):  
M. Lamar Seibenhener ◽  
Jeganathan Ramesh Babu ◽  
Thangiah Geetha ◽  
Hing C. Wong ◽  
N. Rama Krishna ◽  
...  

ABSTRACT Herein, we demonstrate that the ubiquitin-associated (UBA) domain of sequestosome 1/p62 displays a preference for binding K63-polyubiquitinated substrates. Furthermore, the UBA domain of p62 was necessary for aggregate sequestration and cell survival. However, the inhibition of proteasome function compromised survival in cells with aggregates. Mutational analysis of the UBA domain reveals that the conserved hydrophobic patch MGF as well as the conserved leucine in helix 2 are necessary for binding polyubiquitinated proteins and for sequestration-aggregate formation. We report that p62 interacts with the proteasome by pull-down assay, coimmunoprecipitation, and colocalization. Depletion of p62 levels results in an inhibition of ubiquitin proteasome-mediated degradation and an accumulation of ubiquitinated proteins. Altogether, our results support the hypothesis that p62 may act as a critical ubiquitin chain-targeting factor that shuttles substrates for proteasomal degradation.


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