scholarly journals Structural Determinants for Selective Recognition of a Lys48-Linked Polyubiquitin Chain by a UBA Domain

2005 ◽  
Vol 18 (6) ◽  
pp. 687-698 ◽  
Author(s):  
Ranjani Varadan ◽  
Michael Assfalg ◽  
Shahri Raasi ◽  
Cecile Pickart ◽  
David Fushman
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Xuesong Wang ◽  
Willem Jespers ◽  
Rubén Prieto-Díaz ◽  
Maria Majellaro ◽  
Adriaan P. IJzerman ◽  
...  

AbstractThe four adenosine receptors (ARs) A1AR, A2AAR, A2BAR, and A3AR are G protein-coupled receptors (GPCRs) for which an exceptional amount of experimental and structural data is available. Still, limited success has been achieved in getting new chemical modulators on the market. As such, there is a clear interest in the design of novel selective chemical entities for this family of receptors. In this work, we investigate the selective recognition of ISAM-140, a recently reported A2BAR reference antagonist. A combination of semipreparative chiral HPLC, circular dichroism and X-ray crystallography was used to separate and unequivocally assign the configuration of each enantiomer. Subsequently affinity evaluation for both A2A and A2B receptors demonstrate the stereospecific and selective recognition of (S)-ISAM140 to the A2BAR. The molecular modeling suggested that the structural determinants of this selectivity profile would be residue V2506.51 in A2BAR, which is a leucine in all other ARs including the closely related A2AAR. This was herein confirmed by radioligand binding assays and rigorous free energy perturbation (FEP) calculations performed on the L249V6.51 mutant A2AAR receptor. Taken together, this study provides further insights in the binding mode of these A2BAR antagonists, paving the way for future ligand optimization.


2011 ◽  
Vol 405 (4) ◽  
pp. 662-666 ◽  
Author(s):  
Randall C. Wilson ◽  
Stephen P. Edmondson ◽  
Justin W. Flatt ◽  
Kimberli Helms ◽  
Pamela D. Twigg

2009 ◽  
Vol 15 (7) ◽  
pp. 479-491 ◽  
Author(s):  
Jens Lättig ◽  
Alexander Oksche ◽  
Michael Beyermann ◽  
Walter Rosenthal ◽  
Gerd Krause

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Zhiyuan You ◽  
Wen-Xue Jiang ◽  
Ling-Yun Qin ◽  
Zhou Gong ◽  
Wei Wan ◽  
...  

AbstractAutophagy receptor p62/SQSTM1 promotes the assembly and removal of ubiquitylated proteins by forming p62 bodies and mediating their encapsulation in autophagosomes. Here we show that under nutrient-deficient conditions, cellular p62 specifically undergoes acetylation, which is required for the formation and subsequent autophagic clearance of p62 bodies. We identify K420 and K435 in the UBA domain as the main acetylation sites, and TIP60 and HDAC6 as the acetyltransferase and deacetylase. Mechanically, acetylation at both K420 and K435 sites enhances p62 binding to ubiquitin by disrupting UBA dimerization, while K435 acetylation also directly increases the UBA-ubiquitin affinity. Furthermore, we show that acetylation of p62 facilitates polyubiquitin chain-induced p62 phase separation. Our results suggest an essential role of p62 acetylation in the selective degradation of ubiquitylated proteins in cells under nutrient stress, by specifically regulating the assembly of p62 bodies.


2005 ◽  
Vol 24 (18) ◽  
pp. 3178-3189 ◽  
Author(s):  
Jean-François Trempe ◽  
Nicholas R Brown ◽  
Edward D Lowe ◽  
Colin Gordon ◽  
Iain D Campbell ◽  
...  

2004 ◽  
Vol 24 (18) ◽  
pp. 8055-8068 ◽  
Author(s):  
M. Lamar Seibenhener ◽  
Jeganathan Ramesh Babu ◽  
Thangiah Geetha ◽  
Hing C. Wong ◽  
N. Rama Krishna ◽  
...  

ABSTRACT Herein, we demonstrate that the ubiquitin-associated (UBA) domain of sequestosome 1/p62 displays a preference for binding K63-polyubiquitinated substrates. Furthermore, the UBA domain of p62 was necessary for aggregate sequestration and cell survival. However, the inhibition of proteasome function compromised survival in cells with aggregates. Mutational analysis of the UBA domain reveals that the conserved hydrophobic patch MGF as well as the conserved leucine in helix 2 are necessary for binding polyubiquitinated proteins and for sequestration-aggregate formation. We report that p62 interacts with the proteasome by pull-down assay, coimmunoprecipitation, and colocalization. Depletion of p62 levels results in an inhibition of ubiquitin proteasome-mediated degradation and an accumulation of ubiquitinated proteins. Altogether, our results support the hypothesis that p62 may act as a critical ubiquitin chain-targeting factor that shuttles substrates for proteasomal degradation.


2001 ◽  
Vol 394 (2) ◽  
pp. 189-200 ◽  
Author(s):  
Nguyêt-Thanh Ha-Duong ◽  
Cristina Marques-Soares ◽  
Sylvie Dijols ◽  
Marie-Agnès Sari ◽  
Patrick M. Dansette ◽  
...  

1993 ◽  
Vol 70 (04) ◽  
pp. 702-706 ◽  
Author(s):  
Charles F Moldow ◽  
Ronald R Bach ◽  
Katherine Staskus ◽  
Paul D Rick

SummaryThe structural determinants of lipopolysaccharide required for the induction of tissue factor in human umbilical vein endothelial cells were studied. Intact lipid A was essential for the induction of tissue factor whereas the incomplete lipid A precursors lipid IVA and lipid X, as well as monophosphoryl lipid A and acyloxyacyl hydrolase-treated lipopolysaccharide, were unable to induce tissue factor and tissue factor specific mRNA. However, the lipid A precursor, lipid IVA, was able to inhibit LPS-mediated induction of tissue factor; structural determinants distal to lipid A were found to be required for maximal induction of tissue factor activity and tissue factor mRNA. The presence of serum in the assay was found to amplify but was not obligate for tissue factor induction by LPS.


1991 ◽  
Vol 38 (1) ◽  
pp. 113-131 ◽  
Author(s):  
Marta Elliott ◽  
Lauren J. Krivo

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