Molecular Determinants of Selectivity in Disordered Complexes May Shed Light on Specificity in Protein Condensates

Biomolecular condensates challenge the classical concepts of molecular recognition. The variable composition and heterogeneous conformations of liquid-like protein droplets are bottlenecks for high-resolution structural studies. To obtain atomistic insights into the organization of these assemblies, here we have characterized the conformational ensembles of specific disordered complexes, including those of droplet-driving proteins. First, we found that these specific complexes exhibit a high degree of conformational heterogeneity. Second, we found that residues forming contacts at the interface also sample many conformations. Third, we found that different patterns of contacting residues form the specific interface. In addition, we observed a wide range of sequence motifs mediating disordered interactions, including charged, hydrophobic and polar contacts. These results demonstrate that selective recognition can be realized by variable patterns of weakly defined interaction motifs in many different binding configurations. We propose that these principles also play roles in determining the selectivity of biomolecular condensates.

Preparation of carbon-based metal organic frameworks modified molecularly imprinted polymers for selective recognition of bovine hemoglobin in biological samples

In this study, the carbon-based Cu2+-immobilized metal-organic framework modified molecularly imprinted polymer (C@GI@Cu-MOFs@MIPs) adsorbent was prepared using bovine hemoglobin (BHb) as a template molecule with carbon spheres as carriers for...

The sensing mechanism of a flavone-based ESIPT fluorescent chemodosimeter for selective recognition towards fluoride: a theoretical

The sensing mechanism of 3-hydroxyflavone-based (3-HF) fluorescent chemodosimeter 3-triisopropylsilylflavone (3-TPSF) for detecting fluoride (F−) has been theoretically investigated.

Chemosensory Optode Array Based on Pluronic-Stabilized Microspheres for Differential Sensing

Differential sensing techniques are becoming nowadays an attractive alternative to classical selective recognition methods due to the “fingerprinting” possibility allowing identifying various analytes without the need to fabricate highly selective binding recognition sites. This work shows for the first time that surfactant-based ion-sensitive microspheres as optodes in the microscale can be designed as cross-sensitive materials; thus, they are perfect candidates as sensing elements for differential sensing. Four types of the newly developed chemosensory microspheres—anion- and cation-selective, sensitive toward amine- and hydroxyl moiety—exhibited a wide range of linear response (two to five orders of magnitude) in absorbance and/or fluorescence mode, great time stability (at least 2 months), as well as good fabrication repeatability. The array of four types of chemosensitive microspheres was capable of perfect pattern-based identification of eight neurotransmitters: dopamine, epinephrine, norepinephrine, γ-aminobutyric acid (GABA), acetylcholine, histamine, taurine, and phenylethylamine. Moreover, it allowed the quantification of neurotransmitters, also in mixtures. Its selectivity toward neurotransmitters was studied using α- and β-amino acids (Ala, Asp, Pro, Tyr, taurine) in simulated blood plasma solution. It was revealed that the chemosensory optode set could recognize subtle differences in the chemical structure based on the differential interaction of microspheres with various moieties present in the molecule. The presented method is simple, versatile, and convenient, and it could be adopted to various quantitative and qualitative analytical tasks due to the simple adjusting of microspheres components and measurement conditions.