A combination of 19F NMR and surface plasmon resonance for site-specific hit selection and validation of fragment molecules that bind to the ATP-binding site of a kinase

2018 ◽  
Vol 26 (8) ◽  
pp. 1929-1938 ◽  
Author(s):  
Satoru Nagatoishi ◽  
Sou Yamaguchi ◽  
Etsuko Katoh ◽  
Keita Kajita ◽  
Takane Yokotagawa ◽  
...  
2019 ◽  
Vol 93 (15) ◽  
Author(s):  
Tina M. Cairns ◽  
Noah T. Ditto ◽  
Doina Atanasiu ◽  
Huan Lou ◽  
Benjamin D. Brooks ◽  
...  

ABSTRACTHerpes simplex virus (HSV) requires fusion between the viral envelope and host membrane. Four glycoproteins, gD, gH/gL, and gB, are essential for this process. To initiate fusion, gD binds its receptor and undergoes a conformational change that hypothetically leads to activation of gH/gL, which in turn triggers the fusion protein gB to undergo rearrangements leading to membrane fusion. Our model predicts that gD must interact with both its receptor and gH/gL to promote fusion. In support of this, we have shown that gD is structurally divided into two “faces”: one for the binding receptor and the other for its presumed interaction with gH/gL. However, until now, we have been unable to demonstrate a direct interaction between gD and gH/gL. Here, we used surface plasmon resonance to show that the ectodomain of gH/gL binds directly to the ectodomain of gD when (i) gD is captured by certain anti-gD monoclonal antibodies (MAbs) that are bound to a biosensor chip, (ii) gD is bound to either one of its receptors on a chip, and (iii) gD is covalently bound to the chip surface. To localize the gH/gL binding site on gD, we used multiple anti-gD MAbs from six antigenic communities and determined which ones interfered with this interaction. MAbs from three separate communities block gD-gH/gL binding, and their epitopes encircle a geographical area on gD that we propose comprises the gH/gL binding domain. Together, our results show that gH/gL interacts directly with gD, supporting a role for this step in HSV entry.IMPORTANCEHSV entry is a multistep process that requires the actions of four glycoproteins, gD, gH/gL, and gB. Our current model predicts that gD must interact with both its receptor and gH/gL to promote viral entry. Although we know a great deal about how gD binds its receptors, until now we have been unable to demonstrate a direct interaction between gD and gH/gL. Here, we used a highly sensitive surface plasmon resonance technique to clearly demonstrate that gD and gH/gL interact. Furthermore, using multiple MAbs with defined epitopes, we have delineated a domain on gD that is independent of that used for receptor binding and which likely represents the gH/gL interaction domain. Targeting this interaction to prevent fusion may enhance both therapeutic and vaccine strategies.


2016 ◽  
Vol 161 (1) ◽  
pp. 37-43 ◽  
Author(s):  
Natsuki Fukuda ◽  
Yoshiaki Suwa ◽  
Makiyo Uchida ◽  
Yoshihiro Kobashigawa ◽  
Hideshi Yokoyama ◽  
...  

The Analyst ◽  
2015 ◽  
Vol 140 (17) ◽  
pp. 5881-5884 ◽  
Author(s):  
Jing Zhao ◽  
Satoshi Katsube ◽  
Junpei Yamamoto ◽  
Kazuhiko Yamasaki ◽  
Makoto Miyagishi ◽  
...  

The tethering of imidazole to the ATP-binding DNA aptamer increased its affinity for ATP, almost independently of the linker structure or the modification site.


1999 ◽  
Vol 218 (2) ◽  
pp. 456-461 ◽  
Author(s):  
Simon L. McGurk ◽  
Martyn C. Davies ◽  
Clive J. Roberts ◽  
Saul J.B. Tendler ◽  
Philip M. Williams

ChemBioChem ◽  
2016 ◽  
Vol 17 (23) ◽  
pp. 2207-2207
Author(s):  
Inge L. van't Veer ◽  
Nadia O. L. Leloup ◽  
Alexander J. F. Egan ◽  
Bert J. C. Janssen ◽  
Nathaniel I. Martin ◽  
...  

The Analyst ◽  
2019 ◽  
Vol 144 (20) ◽  
pp. 6033-6040 ◽  
Author(s):  
Ling Wu ◽  
Yuhan He ◽  
Yuqing Hu ◽  
Hanwen Lu ◽  
Zhong Cao ◽  
...  

Real-time monitoring of site-specific phosphorylation of p53 protein and its binding to MDM2 is conducted using dual-channel surface plasmon resonance (SPR).


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