scholarly journals Erythrocyte Membrane Model with Explicit Description of the Lipid Bilayer and the Spectrin Network

2014 ◽  
Vol 107 (3) ◽  
pp. 642-653 ◽  
Author(s):  
He Li ◽  
George Lykotrafitis
2020 ◽  
Author(s):  
Ruth Chan ◽  
Michael Falato ◽  
Huiyun Liang ◽  
Liao Y. Chen

ABSTRACTModelling water and membrane lipids is an essential element in the computational research of biophysical/biochemical processes such as water transport across the cell membrane. In this study, we examined the accuracies of two popular water models, TIP3P and TIP4P, in the molecular dynamics simulations of erythrocyte aquaporins (AQP1 and AQP3). We modelled the erythrocyte membrane as an asymmetric lipid bilayer with appropriate lipid compositions of its inner and outer leaflet, in comparison with a symmetric lipid bilayer of a single lipid type. We computed the AQP1/3 permeabilities with the transition state theory with full correction for recrossing events. We also conducted cell swelling assays for water transport across the erythrocyte membrane. The experimental results agree with the TIP3P water-erythrocyte membrane model, in confirmation of the expected accuracy of the erythrocyte membrane model, the TIP3P water model, and the CHARMM parameters for water-protein interactions.


1989 ◽  
Vol 16 (3) ◽  
pp. 274-280
Author(s):  
Boris Isomaa ◽  
Henry Hägerstrand ◽  
Gun I.L. Paatero

Amphiphilic compounds with distinct apolar and polar parts are readily intercalated into the erythrocyte membrane. When intercalated into the membrane, amphiphiles are probably orientated so that the polar head is at the polar-apolar interface of the lipid bilayer and the hydrophobic part within the apolar core of the bilayer. However, by virtue of their difference in molecular shape from the bulk lipids of the lipid bilayer, it is possible that the intercalated amphiphiles are partly segregated from bulk lipids and accumulate at protein-lipid interfaces in the bilayer, where the packing of the bilayer lipids may be less ordered. Our studies show that amphiphiles, when intercalated into the erythrocyte membrane, trigger alterations in several membrane-connected functions. Some of the alterations induced (decreased osmotic fragility, increased passive potassium fluxes) seem to be due to non-specific interactions of the amphiphiles with the membrane, whereas other functions (ion transport mediated by membrane proteins, regulation of cell shape) seem to be sensitive to particular features of the amphiphiles. Our studies indicate that the intercalation of amphiphiles into the erythrocyte membrane must involve rearrangements within the lipid bilayer. We have suggested that, when intercalated into the lipid bilayer, amphiphiles trigger a rapid formation of non-bilayer phases, which protect the bilayer against a collapse and bring about a trans-bilayer redistribution of intercalated amphiphiles as well as of bilayer lipids. At high sublytic concentrations, this process may also involve a release of microvesicles from the membrane.


2020 ◽  
pp. 114689
Author(s):  
Stéphanie Andrade ◽  
Maria João Ramalho ◽  
Joana Angélica Loureiro ◽  
Maria Carmo Pereira

Author(s):  
George Lykotrafitis ◽  
He Li

Biological membranes are vital components of living cells as they function to maintain the structural integrity of the cells. Red blood cell (RBC) membrane comprises the lipid bilayer and the cytoskeleton network. The lipid bilayer consists of phospholipids, integral membrane proteins, peripheral proteins and cholesterol. It behaves as a 2D fluid. The cytoskeleton is a network of spectrin tetramers linked at the actin junctions. It is connected to the lipid bilayer primarily via Band-3 and ankyrin proteins. In this paper, we introduce a coarse-grained model with high computational efficiency for simulating a variety of dynamic and topological problems involving erythrocyte membranes. Coarse-grained agents are used to represent a cluster of lipid molecules and proteins with a diameter on the order of lipid bilayer thickness and carry both translational and rotational freedom. The membrane cytoskeleton is modeled as a canonical exagonal network of entropic springs that behave as Worm-Like-Chains (WLC). By simultaneously invoking these characteristics, the proposed model facilitates simulations that span large length-scales (∼ μm) and time-scales (∼ ms). The behavior of the model under shearing at different rates is studied. At low strain rates, the resulted shear stress is mainly due to the spectrin network and it shows the characteristic non-linear behavior of entropic networks, while the viscosity of the fluid-like lipid bilayer contributes to the resulting shear stress at higher strain rates. The apparent ease of this model in combining the spectrin network with the lipid bilayer presents a major advantage over conventional continuum methods such as finite element or finite difference methods for cell membranes.


2005 ◽  
Vol 73 (4) ◽  
pp. 536-543 ◽  
Author(s):  
M. Arslan ◽  
M. C. Boyce

The mechanical behavior of the membrane of the red blood cell is governed by two primary microstructural features: the lipid bilayer and the underlying spectrin network. The lipid bilayer is analogous to a two-dimensional fluid in that it resists changes to its surface area, yet poses little resistance to shear. A skeletal network of spectrin molecules is cross-linked to the lipid bilayer and provides the shear stiffness of the membrane. Here, a general continuum level constitutive model of the large stretch behavior of the red blood cell membrane that directly incorporates the microstructure of the spectrin network is developed. The triangulated structure of the spectrin network is used to identify a representative volume element (RVE) for the model. A strain energy density function is constructed using the RVE together with various representations of the underlying molecular chain force-extension behaviors where the chain extensions are kinematically determined by the macroscopic deformation gradient. Expressions for the nonlinear finite deformation stress-strain behavior of the membrane are obtained by proper differentiation of the strain energy function. The stress-strain behaviors of the membrane when subjected to tensile and simple shear loading in different directions are obtained, demonstrating the capabilities of the proposed microstructurally detailed constitutive modeling approach in capturing the small to large strain nonlinear, anisotropic mechanical behavior. The sources of nonlinearity and evolving anisotropy are delineated by simultaneous monitoring of the evolution in microstructure including chain extensions, forces and orientations as a function of macroscopic stretch. The model captures the effect of pretension on the mechanical response where pretension is found to increase the initial modulus and decrease the limiting extensibility of the networked membrane.


2018 ◽  
Vol 20 (21) ◽  
pp. 14753-14764 ◽  
Author(s):  
Dominika Wrobel ◽  
Radka Kubikova ◽  
Monika Müllerová ◽  
Tomas Strašák ◽  
Květoslav Růžička ◽  
...  

Factors such as shielding of charge on dendrimers by bulky substituents and/or hydrophobicity of substituents are important for final ability of dendrimers to interact with and to penetrate deep into the lipid bilayer.


2006 ◽  
Vol 39 ◽  
pp. S330
Author(s):  
Q. Zhu ◽  
C. Vera ◽  
R. Asaro ◽  
R. Skelton ◽  
L.A. Sung

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