Effect of halogenated indoles on biofilm formation, virulence, and root surface colonization by Agrobacterium tumefaciens

Chemosphere ◽  
2022 ◽  
pp. 133603
Author(s):  
Bilal Ahmed ◽  
Afreen Jailani ◽  
Jin-Hyung Lee ◽  
Jintae Lee
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Biofilm Formation ◽  
Root Surface ◽  
Surface Colonization

scholarly journals The Agrobacterium tumefaciens CheY-like protein ClaR regulates biofilm formation

Microbiology ◽  
2017 ◽  
Vol 163 (11) ◽  
pp. 1680-1691 ◽  
Author(s):  
Nathan Feirer ◽  
DohHyun Kim ◽  
Jing Xu ◽  
Nico Fernandez ◽  
Christopher M. Waters ◽  
...  
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Biofilm Formation

scholarly journals Spermidine Inversely Influences Surface Interactions and Planktonic Growth in Agrobacterium tumefaciens

2016 ◽  
Vol 198 (19) ◽  
pp. 2682-2691 ◽  
Author(s):  
Yi Wang ◽  
Sok Ho Kim ◽  
Ramya Natarajan ◽  
Jason E. Heindl ◽  
Eric L. Bruger ◽  
...  
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Biofilm Formation ◽  
Direct Synthesis ◽  
Wild Type ◽  
Cyclic Diguanylate ◽  
Content Type ◽  
Exogenous Addition ◽  
In The Wild ◽  
Growth Requirement ◽  
Transposon Insertions

ABSTRACTIn bacteria, the functions of polyamines, small linear polycations, are poorly defined, but these metabolites can influence biofilm formation in several systems. Transposon insertions in an ornithine decarboxylase (odc) gene inAgrobacterium tumefaciens, predicted to direct synthesis of the polyamine putrescine from ornithine, resulted in elevated cellulose. Null mutants forodcgrew somewhat slowly in a polyamine-free medium but exhibited increased biofilm formation that was dependent on cellulose production. Spermidine is an essential metabolite inA. tumefaciensand is synthesized from putrescine inA. tumefaciensvia the stepwise actions of carboxyspermidine dehydrogenase (CASDH) and carboxyspermidine decarboxylase (CASDC). Exogenous addition of either putrescine or spermidine to theodcmutant returned biofilm formation to wild-type levels. Low levels of exogenous spermidine restored growth to CASDH and CASDC mutants, facilitating weak biofilm formation, but this was dampened with increasing concentrations. Norspermidine rescued growth for theodc, CASDH, and CASDC mutants but did not significantly affect their biofilm phenotypes, whereas in the wild type, it stimulated biofilm formation and depressed spermidine levels. Theodcmutant produced elevated levels of cyclic diguanylate monophosphate (c-di-GMP), exogenous polyamines modulated these levels, and expression of a c-di-GMP phosphodiesterase reversed the enhanced biofilm formation. Prior work revealed accumulation of the precursors putrescine and carboxyspermidine in the CASDH and CASDC mutants, respectively, but unexpectedly, both mutants accumulated homospermidine; here, we show that this requires a homospermidine synthase (hss) homologue.IMPORTANCEPolyamines are small, positively charged metabolites that are nearly ubiquitous in cellular life. They are often essential in eukaryotes and more variably in bacteria. Polyamines have been reported to influence the surface-attached biofilm formation of several bacteria. InAgrobacterium tumefaciens, mutants with diminished levels of the polyamine spermidine are stimulated for biofilm formation, and exogenous provision of spermidine decreases biofilm formation. Spermidine is also essential forA. tumefaciensgrowth, but the related polyamine norspermidine exogenously rescues growth and does not diminish biofilm formation, revealing that the growth requirement and biofilm control are separable. Polyamine control of biofilm formation appears to function via effects on the cellular second messenger cyclic diguanylate monophosphate, regulating the transition from a free-living to a surface-attached lifestyle.

scholarly journals Exopolysaccharide Production Is Required for Biofilm Formation and Plant Colonization by the Nitrogen-Fixing Endophyte Gluconacetobacter diazotrophicus

2011 ◽  
Vol 24 (12) ◽  
pp. 1448-1458 ◽  
Author(s):  
Carlos H. S. G. Meneses ◽  
Luc F. M. Rouws ◽  
Jean L. Simões-Araújo ◽  
Marcia S. Vidal ◽  
José I. Baldani
Keyword(s):  
Biofilm Formation ◽  
Bacterial Species ◽  
Carbon Sources ◽  
Normal Growth ◽  
Root Surface ◽  
Plant Colonization ◽  
Gluconacetobacter Diazotrophicus ◽  
Nitrogen Fixing ◽  
Wild Type ◽  
Endophytic Colonization

The genome of the endophytic diazotrophic bacterial species Gluconacetobacter diazotrophicus PAL5 (PAL5) revealed the presence of a gum gene cluster. In this study, the gumD gene homologue, which is predicted to be responsible for the first step in exopolysaccharide (EPS) production, was insertionally inactivated and the resultant mutant (MGD) was functionally studied. The mutant MGD presented normal growth and nitrogen (N2) fixation levels but did not produce EPS when grown on different carbon sources. MGD presented altered colony morphology on soft agar plates (0.3% agar) and was defective in biofilm formation on glass wool. Most interestingly, MGD was defective in rice root surface attachment and in root surface and endophytic colonization. Genetic complementation reverted all mutant phenotypes. Also, the addition of EPS purified from culture supernatants of the wild-type strain PAL5 to the mutant MGD was effective in partially restoring wild-type biofilm formation and plant colonization. These data provide strong evidence that the PAL5 gumD gene is involved in EPS biosynthesis and that EPS biosynthesis is required for biofilm formation and plant colonization. To our knowledge, this is the first report of a role of EPS in the endophytic colonization of graminaceous plants by a nitrogen-fixing bacterium.

scholarly journals Agrobacterium tumefaciens ExoR represses succinoglycan biosynthesis and is required for biofilm formation and motility

Microbiology ◽  
2010 ◽  
Vol 156 (9) ◽  
pp. 2670-2681 ◽  
Author(s):  
Amelia D. Tomlinson ◽  
Bronwyn Ramey-Hartung ◽  
Travis W. Day ◽  
Peter M. Merritt ◽  
Clay Fuqua
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Biofilm Formation ◽  
Sinorhizobium Meliloti ◽  
Plant Tissues ◽  
Flagellar Motility ◽  
Regulatory Pathway ◽  
Flow Conditions ◽  
Two Component System ◽  
Form Complex ◽  
Abiotic Surfaces

The ubiquitous plant pathogen Agrobacterium tumefaciens attaches efficiently to plant tissues and abiotic surfaces and can form complex biofilms. A genetic screen for mutants unable to form biofilms on PVC identified disruptions in a homologue of the exoR gene. ExoR is a predicted periplasmic protein, originally identified in Sinorhizobium meliloti, but widely conserved among alphaproteobacteria. Disruptions in the A. tumefaciens exoR gene result in severely compromised attachment to abiotic surfaces under static and flow conditions, and to plant tissues. These mutants are hypermucoid due to elevated production of the exopolysaccharide succinoglycan, via derepression of the exo genes that direct succinoglycan synthesis. In addition, exoR mutants have lost flagellar motility, do not synthesize detectable flagellin and are diminished in flagellar gene expression. The attachment deficiency is, however, complex and not solely attributable to succinoglycan overproduction or motility disruption. A. tumefaciens ExoR can function independently of the ChvG–ChvI two component system, implicated in ExoR-dependent regulation in S. meliloti. Mutations that suppress the exoR motility defect suggest a branched regulatory pathway controlling succinoglycan synthesis, motility and biofilm formation.

scholarly journals Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens

2020 ◽  
Vol 202 (22) ◽  
Author(s):  
Alexander Kraus ◽  
Mareen Weskamp ◽  
Jennifer Zierles ◽  
Miriam Balzer ◽  
Ramona Busch ◽  
...  
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Carbon Metabolism ◽  
Unknown Function ◽  
Biofilm Formation ◽  
Nutrient Acquisition ◽  
Protein Profiling ◽  
Cell Physiology ◽  
Content Type ◽  
Small Proteins ◽  
Domain Of Unknown Function

ABSTRACT In any given organism, approximately one-third of all proteins have a yet-unknown function. A widely distributed domain of unknown function is DUF1127. Approximately 17,000 proteins with such an arginine-rich domain are found in 4,000 bacteria. Most of them are single-domain proteins, and a large fraction qualifies as small proteins with fewer than 50 amino acids. We systematically identified and characterized the seven DUF1127 members of the plant pathogen Agrobacterium tumefaciens. They all give rise to authentic proteins and are differentially expressed as shown at the RNA and protein levels. The seven proteins fall into two subclasses on the basis of their length, sequence, and reciprocal regulation by the LysR-type transcription factor LsrB. The absence of all three short DUF1127 proteins caused a striking phenotype in later growth phases and increased cell aggregation and biofilm formation. Protein profiling and transcriptome sequencing (RNA-seq) analysis of the wild type and triple mutant revealed a large number of differentially regulated genes in late exponential and stationary growth. The most affected genes are involved in phosphate uptake, glycine/serine homeostasis, and nitrate respiration. The results suggest a redundant function of the small DUF1127 paralogs in nutrient acquisition and central carbon metabolism of A. tumefaciens. They may be required for diauxic switching between carbon sources when sugar from the medium is depleted. We end by discussing how DUF1127 might confer such a global impact on cell physiology and gene expression. IMPORTANCE Despite being prevalent in numerous ecologically and clinically relevant bacterial species, the biological role of proteins with a domain of unknown function, DUF1127, is unclear. Experimental models are needed to approach their elusive function. We used the phytopathogen Agrobacterium tumefaciens, a natural genetic engineer that causes crown gall disease, and focused on its three small DUF1127 proteins. They have redundant and pervasive roles in nutrient acquisition, cellular metabolism, and biofilm formation. The study shows that small proteins have important previously missed biological functions. How small basic proteins can have such a broad impact is a fascinating prospect of future research.

A combination of cellular automata and agent-based models for simulating the root surface colonization by bacteria

2012 ◽  
Vol 247 ◽  
pp. 1-10 ◽  
Author(s):  
Adrialy L. Muci ◽  
Milko A. Jorquera ◽  
Ándres I. Ávila ◽  
Zed Rengel ◽  
David E. Crowley ◽  
...  
Keyword(s):  
Cellular Automata ◽  
Root Surface ◽  
Agent Based Models ◽  
Agent Based ◽  
Surface Colonization

The global regulator GacS regulates biofilm formation in Pseudomonas chlororaphis O6 differently with carbon source

2014 ◽  
Vol 60 (3) ◽  
pp. 133-138 ◽  
Author(s):  
Ji Soo Kim ◽  
Yong Hwan Kim ◽  
Ju Yeon Park ◽  
Anne J. Anderson ◽  
Young Cheol Kim
Keyword(s):  
Carbon Source ◽  
Biofilm Formation ◽  
Defined Medium ◽  
Root Surface ◽  
Gray Mold ◽  
Systemic Resistance ◽  
Pseudomonas Chlororaphis ◽  
Wild Type ◽  
Tomato Leaf Mold ◽  
Phenazine Production

An aggressive root colonizer, Pseudomonas chlororaphis O6 produces various secondary metabolites that impact plant health. The sensor kinase GacS is a key regulator of the expression of biocontrol-related traits. Biofilm formation is one such trait because of its role in root surface colonization. This paper focuses on the effects of carbon source on biofilm formation. In comparison with the wild type, a gacS mutant formed biofilms at a reduced level with sucrose as the major carbon source but at much higher level with mannitol in the defined medium. Biofilm formation by the gacS mutant occurred without phenazine production and in the absence of normal levels of acyl homoserine lactones, which promote biofilms with other pseudomonads. Colonization of tomato roots was similar for the wild type and gacS mutant, showing that any differences in biofilm formation in the rhizosphere were not of consequence under the tested conditions. The reduced ability of the gacS mutant to induce systemic resistance against tomato leaf mold and tomato gray mold was consistent with a lack of production of effectors, such as phenazines. These results demonstrated plasticity in biofilm formation and root colonization in the rhizosphere by a beneficial pseudomonad.

Early root surface colonization by human periodontal ligament fibroblasts following treatment with different biomaterials

2013 ◽  
Vol 71 (6) ◽  
pp. 1579-1587 ◽  
Author(s):  
Adrian Kasaj ◽  
Marcus O. Klein ◽  
Julia Dupont ◽  
Brita Willershausen ◽  
Ulrike Krahn ◽  
...  
Keyword(s):  
Periodontal Ligament ◽  
Root Surface ◽  
Periodontal Ligament Fibroblasts ◽  
Surface Colonization ◽  
Human Periodontal Ligament Fibroblasts

scholarly journals Viscoelasticity of Staphylococcus aureus Biofilms in Response to Fluid Shear Allows Resistance to Detachment and Facilitates Rolling Migration

2005 ◽  
Vol 71 (4) ◽  
pp. 2175-2178 ◽  
Author(s):  
Cory J. Rupp ◽  
Christoph A. Fux ◽  
Paul Stoodley
Keyword(s):  
Staphylococcus Aureus ◽  
Medical Devices ◽  
Biofilm Formation ◽  
Bloodstream Infections ◽  
Flow Cell ◽  
Fluid Shear ◽  
Surface Colonization

ABSTRACT Staphylococcus aureus is a leading cause of catheter-related bloodstream infections and endocarditis. Both involve (i) biofilm formation, (ii) exposure to fluid shear, and (iii) high rates of dissemination. We found that viscoelasticity allowed S. aureus biofilms to resist detachment due to increased fluid shear by deformation, while remaining attached to a surface. Further, we report that S. aureus microcolonies moved downstream by rolling along the lumen walls of a glass flow cell, driven by the flow of the overlying fluid. The rolling appeared to be controlled by viscoelastic tethers. This tethered rolling may be important for the surface colonization of medical devices by nonmotile bacteria.

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