scholarly journals Leveraging barrel medic genome sequence for the development and use of genomic resources for genetic analysis and breeding in legumes

2019 ◽  
Vol 39 ◽  
pp. 30-41
Author(s):  
Rabiya Bi ◽  
Lohithaswa H. Chandappa ◽  
Lokesh Siddalingaiah ◽  
Sunil Kumar Kenchanmane Raju ◽  
Shilpa Hassan Balakrishna ◽  
...  
2012 ◽  
Vol 86 (18) ◽  
pp. 10236-10237 ◽  
Author(s):  
Yuki Matsushima ◽  
Etsuko Nakajima ◽  
Tuan Anh Nguyen ◽  
Hideaki Shimizu ◽  
Atsuko Kano ◽  
...  

A rare human G10P[8] rotavirus with a reassortment between bovine and human viruses was detected from a patient with acute gastroenteritis in Vietnam. Genetic analysis using complete coding sequences of all segments showed a genomic constellation of this virus of G10-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Its VP7 region was genetically related to that of a bovine rotavirus derived from Australia (strain VICG10.01), whereas all other genes were identical to those of a human rotavirus derived from Australia (strain Victoria/CK00047). These results indicate a possibility that the reassortment of the rotavirus was caused by immune escape in Australia and the rotavirus was carried to Vietnam. Additionally, this finding will help further understanding the evolution of rotaviruses circulating in Vietnam.


2008 ◽  
Vol 2008 ◽  
pp. 1-9 ◽  
Author(s):  
Glenn J. Bryan ◽  
Ingo Hein

Potato, a highly heterozygous tetraploid, is undergoing an exciting phase of genomics resource development. The potato research community has established extensive genomic resources, such as large expressed sequence tag (EST) data collections, microarrays and other expression profiling platforms, and large-insert genomic libraries. Moreover, potato will now benefit from a global potato physical mapping effort, which is serving as the underlying resource for a full potato genome sequencing project, now well underway. These tools and resources are having a major impact on potato breeding and genetics. The genome sequence will provide an invaluable comparative genomics resource for cross-referencing to the other Solanaceae, notably tomato, whose sequence is also being determined. Most importantly perhaps, a potato genome sequence will pave the way for the functional analysis of the large numbers of potato genes that await discovery. Potato, being easily transformable, is highly amenable to the investigation of gene function by biotechnological approaches. Recent advances in the development of Virus Induced Gene Silencing (VIGS) and related methods will facilitate rapid progress in the analysis of gene function in this important crop.


2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Niloofar Kavousi ◽  
Wilhelm Wei Han Eng ◽  
Yin Peng Lee ◽  
Lian Huat Tan ◽  
Ravindran Thuraisingham ◽  
...  

We report here the first high-quality draft genome sequence of Pasteurella multocida sequence type 128, which was isolated from the infected finger bone of an adult female who was bitten by a domestic dog. The draft genome will be a valuable addition to the scarce genomic resources available for P. multocida .


2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Yasufumi Matsumura ◽  
Gisele Peirano ◽  
Johann D. D. Pitout

ABSTRACT We report here the complete genome sequence of Escherichia coli J53, which is used as a recipient in conjugation experiments and is a laboratory strain derived from E. coli K-12. This genome sequence will help in the development of a comprehensive genetic analysis of conjugative elements.


2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Yasufumi Matsumura ◽  
Masaki Yamamoto ◽  
Satoshi Nakano ◽  
Miki Nagao

ABSTRACT We report here the complete genome sequence of Escherichia coli ME8067, an azide-resistant laboratory strain used for conjugation experiments. The ME8067 genome was closely related to E. coli strain K-12 substrain W3110. This genome sequence will support further genetic analysis of conjugative elements.


2005 ◽  
Vol 71 (8) ◽  
pp. 4925-4929 ◽  
Author(s):  
Olivia McAuliffe ◽  
Raul J. Cano ◽  
Todd R. Klaenhammer

ABSTRACT Two genes, bshA and bshB, encoding bile salt hydrolase enzymes (EC 3.5.1.24) were identified in the genome sequence of Lactobacillus acidophilus NCFM. Targeted inactivation of these genes via chromosomal insertion of an integration vector demonstrated different substrate specificities for these two enzymes.


2012 ◽  
Vol 136 ◽  
pp. S72-S73
Author(s):  
Christina A. Castellani ◽  
Sujit Maiti ◽  
Richard L. O'Reilly ◽  
Shiva M. Singh

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