Seasonal and spatial distribution of antibiotic resistance genes in the sediments along the Yangtze Estuary, China

2018 ◽  
Vol 242 ◽  
pp. 576-584 ◽  
Author(s):  
Xing-pan Guo ◽  
Xinran Liu ◽  
Zuo-shun Niu ◽  
Da-pei Lu ◽  
Sai Zhao ◽  
...  
2018 ◽  
Vol 129 ◽  
pp. 277-286 ◽  
Author(s):  
Xing-pan Guo ◽  
Yi Yang ◽  
Da-pei Lu ◽  
Zuo-shun Niu ◽  
Jing-nan Feng ◽  
...  

2020 ◽  
Vol 744 ◽  
pp. 140713 ◽  
Author(s):  
Xing-pan Guo ◽  
Sai Zhao ◽  
Yu-ru Chen ◽  
Jing Yang ◽  
Li-jun Hou ◽  
...  

2021 ◽  
Author(s):  
Siqi Shen ◽  
Shengke Yang ◽  
Dan Zhang ◽  
Yang Jia ◽  
Fanfan Zhang ◽  
...  

Abstract The hyporheic zone (HZ) is an active biogeochemical region where groundwater and surface water mix and a potential reservoir for antibiotic resistance genes (ARGs). In this paper, the relative abundance and spatial distribution of ARGs in the HZ media was investigated, taking into consideration both the 5 speciation of 6 metals and the local characteristics. The samples of surface water, groundwater and sediment were collected from Zaohe-Weihe rivers of Xi’an City, which is representative cities with characteristics of the north-west region region of China. Of 271 ARGs associated with 9 antibiotics, 228 were detected, with a total detection rate of 84%. Sulfonamide and aminoglycoside ARGs were the dominant types of ARGs. The top 6 ARGs and mobile genetic elements (MGEs) in terms of abundance were tnpA-04, cepA, sul1, aadA2-03, sul2 and intI1. The results of principal component analysis (PCA) showed that the distribution characteristics of ARGs were not associated with the sampling sites but with the environmental medias. Similarity in the water phases and significant differences in the water and sediment phases were found. The redundancy analysis (RDA) identified the key factors controlling ARG pollution, including dissolved oxygen (DO) in surface water, total nitrogen (TN) in groundwater and total organic carbon (TOC) in sediments. In terms of the speciation of heavy metals, we further revealed the promotion effect between ARGs and heavy metals, especially the residual fraction of Ni. In terms of horizontal transfer mechanism, ARGs were significantly correlated with tnpA-03 in water phase, and were significantly correlated with tnpA-04 in sediment. In the three media, intI1 and ARGs, all show a significant correlation. These findings showed that hyporheic zone exerted a bottleneck effect on the distribution and transfer of ARGs.


2016 ◽  
Vol 1 (2) ◽  
pp. 22 ◽  
Author(s):  
Navindra Kumari Palanisamy ◽  
Parasakthi Navaratnam ◽  
Shamala Devi Sekaran

Introduction: Streptococcus pneumoniae is an important bacterial pathogen, causing respiratory infection. Penicillin resistance in S. pneumoniae is associated with alterations in the penicillin binding proteins, while resistance to macrolides is conferred either by the modification of the ribosomal target site or efflux mechanism. This study aimed to characterize S. pneumoniae and its antibiotic resistance genes using 2 sets of multiplex PCRs. Methods: A quintuplex and triplex PCR was used to characterize the pbp1A, ermB, gyrA, ply, and the mefE genes. Fifty-eight penicillin sensitive strains (PSSP), 36 penicillin intermediate strains (PISP) and 26 penicillin resistance strains (PRSP) were used. Results: Alteration in pbp1A was only observed in PISP and PRSP strains, while PCR amplification of the ermB or mefE was observed only in strains with reduced susceptibility to erythromycin. The assay was found to be sensitive as simulated blood cultures showed the lowest level of detection to be 10cfu. Conclusions: As predicted, the assay was able to differentiate penicillin susceptible from the non-susceptible strains based on the detection of the pbp1A gene, which correlated with the MIC value of the strains.


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