scholarly journals Back-reactions, short-circuits, leaks and other energy wasteful reactions in biological electron transfer: Redox tuning to survive life in O2

FEBS Letters ◽  
2012 ◽  
Vol 586 (5) ◽  
pp. 603-616 ◽  
Author(s):  
A. William Rutherford ◽  
Artur Osyczka ◽  
Fabrice Rappaport
2016 ◽  
Vol 1857 ◽  
pp. e17
Author(s):  
A. William Rutherford ◽  
K. Brinkert ◽  
S. de Causmaecker ◽  
A. Krieger-Lizskay ◽  
A. Fantuzzi

2006 ◽  
Vol 361 (1472) ◽  
pp. 1295-1305 ◽  
Author(s):  
Christopher C Moser ◽  
Christopher C Page ◽  
P. Leslie Dutton

Biological electron transfer is designed to connect catalytic clusters by chains of redox cofactors. A review of the characterized natural redox proteins with a critical eye for molecular scale measurement of variation and selection related to physiological function shows no statistically significant differences in the protein medium lying between cofactors engaged in physiologically beneficial or detrimental electron transfer. Instead, control of electron tunnelling over long distances relies overwhelmingly on less than 14 Å spacing between the cofactors in a chain. Near catalytic clusters, shorter distances (commonly less than 7 Å) appear to be selected to generate tunnelling frequencies sufficiently high to scale the barriers of multi-electron, bond-forming/-breaking catalysis at physiological rates. We illustrate this behaviour in a tunnelling network analysis of cytochrome c oxidase. In order to surmount the large, thermally activated, adiabatic barriers in the 5–10 kcal mol −1 range expected for H + motion and O 2 reduction at the binuclear centre of oxidase on the 10 3 –10 5  s −1 time-scale of respiration, electron access with a tunnelling frequency of 10 9 or 10 10  s −1 is required. This is provided by selecting closely placed redox centres, such as haem a (6.9 Å) or tyrosine (4.9 Å). A corollary is that more distantly placed redox centres, such as Cu A , cannot rapidly scale the catalytic site barrier, but must send their electrons through more closely placed centres, avoiding direct short circuits that might circumvent proton pumping coupled to haems a to a 3 electron transfer. The selection of distances and energetic barriers directs electron transfer from Cu A to haem a rather than a 3 , without any need for delicate engineering of the protein medium to ‘hard wire’ electron transfer. Indeed, an examination of a large number of oxidoreductases provides no evidence of such naturally selected wiring of electron tunnelling pathways.


2012 ◽  
Vol 14 (17) ◽  
pp. 5902 ◽  
Author(s):  
Aurélien de la Lande ◽  
Nathan S. Babcock ◽  
Jan Řezáč ◽  
Bernard Lévy ◽  
Barry C. Sanders ◽  
...  

2019 ◽  
Vol 116 (6) ◽  
pp. 2259-2264 ◽  
Author(s):  
Simona G. Huwiler ◽  
Claudia Löffler ◽  
Sebastian E. L. Anselmann ◽  
Hans-Joachim Stärk ◽  
Martin von Bergen ◽  
...  

Reversible biological electron transfer usually occurs between redox couples at standard redox potentials ranging from +0.8 to −0.5 V. Dearomatizing benzoyl-CoA reductases (BCRs), key enzymes of the globally relevant microbial degradation of aromatic compounds at anoxic sites, catalyze a biological Birch reduction beyond the negative limit of this redox window. The structurally characterized BamBC subunits of class II BCRs accomplish benzene ring reduction at an active-site tungsten cofactor; however, the mechanism and components involved in the energetic coupling of endergonic benzene ring reduction have remained hypothetical. We present a 1-MDa, membrane-associated, Bam[(BC)2DEFGHI]2complex from the anaerobic bacteriumGeobacter metallireducensharboring 4 tungsten, 4 zinc, 2 selenocysteines, 6 FAD, and >50 FeS cofactors. The results suggest that class II BCRs catalyze electron transfer to the aromatic ring, yielding a cyclic 1,5-dienoyl-CoA via two flavin-based electron bifurcation events. This work expands our knowledge of energetic couplings in biology by high-molecular-mass electron bifurcating machineries.


2016 ◽  
Vol 65 ◽  
pp. 94-99 ◽  
Author(s):  
C. Masato Nakano ◽  
Erick Moen ◽  
Hye Suk Byun ◽  
Heng Ma ◽  
Bradley Newman ◽  
...  

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