Nested introns in an intron: Evidence of multi-step splicing in a large intron of the human dystrophin pre-mRNA

FEBS Letters ◽  
2013 ◽  
Vol 587 (6) ◽  
pp. 555-561 ◽  
Author(s):  
Hitoshi Suzuki ◽  
Toshiki Kameyama ◽  
Kenji Ohe ◽  
Toshifumi Tsukahara ◽  
Akila Mayeda
Genetics ◽  
2002 ◽  
Vol 160 (2) ◽  
pp. 793-798
Author(s):  
Uberto Pozzoli ◽  
Manuela Sironi ◽  
Rachele Cagliani ◽  
Giacomo P Comi ◽  
Alessandra Bardoni ◽  
...  

Abstract We present analysis of intronic sequences in the human DMD and UTRN genes. In both genes accumulation of repeated elements could account for intron expansion. Out-of-frame rod-domain exons have stronger splice sites and are separated by significantly longer introns as compared to in-frame exons. These features are unique for the two homologs and not shared by other spectrin superfamily genes.


2007 ◽  
Vol 17 (9-10) ◽  
pp. 783 ◽  
Author(s):  
R. Benchaouir ◽  
A. Goyenvalle ◽  
M. Meregalli ◽  
M. Belicchi ◽  
A. Farini ◽  
...  

Genetics ◽  
1997 ◽  
Vol 145 (2) ◽  
pp. 311-323 ◽  
Author(s):  
Brent Richter ◽  
Manyuan Long ◽  
R C Lewontin ◽  
Eiji Nitasaka

A study of polymorphism and species divergence of the dpp gene of Drosophila has been made. Eighteen lines from a population of D. melanogaster were sequenced for 5200 bp of the Hin region of the gene, coding for the dpp polypeptide. A comparison was made with sequence from D. simulans. Ninety-six silent polymorphisms and three amino acid replacement polymorphisms were found. The overall silent polymorphism (0.0247) is low, but haplotype diversity (0.0066 for effectively silent sites and 0.0054 for all sites) is in the range found for enzyme loci. Amino acid variation is absent in the N-terminal signal peptide, the C-terminal TGF-β peptide and in the N-terminal half of the pro-protein region. At the nucleotide level there is strong conservation in the middle half of the large intron and in the 3′ untranslated sequence of the last exon. The 3′ untranslated conservation, which is perfect for 110 bp among all the divergent species, is unexplained. There is strong positive linkage disequilibrium among polymorphic sites, with stretches of apparent gene conversion among originally divergent sequences. The population apparently is a migration mixture of divergent clades.


1989 ◽  
Vol 9 (12) ◽  
pp. 5456-5463 ◽  
Author(s):  
G L Shen-Ong ◽  
B Lüscher ◽  
R N Eisenman

The major protein encoded by the c-myb oncogene in many species has been identified as an unstable, nuclear DNA-binding protein with an apparent molecular mass of 75 to 80 kilodaltons (p75c-myb). Recently, an alternatively spliced form of c-myb-encoded mRNA has been identified in murine cells containing either normal or rearranged c-myb genes. This mRNA includes a new exon, termed E6A, formed through use of cryptic splice sites located in the large intron between c-myb exons vE6 and vE7. E6A is predicted to contribute an internal 121-residue in-frame insertion into a region C terminal of the DNA-binding domain the c-myb-encoded protein. Here we report the identification of an 85-kilodalton (p85c-myb-E6A) protein as the translation product of the alternatively spliced E6A c-myb mRNA. This protein as well as p75c-myb were precipitated with anti-Myb antibodies raised against the conserved DNA-binding region of c-Myb. Proteolytic mapping studies showed that the two proteins are highly related but not identical. However, only the p85 protein reacted with an antiserum prepared against the E6A region expressed in bacteria, demonstrating that p85 but not p75 contains E6A sequences. In addition, the mobilities of both p85 and p75 were increased in myeloid tumor cell lines containing proviral integrations upstream of the 5' coding exons of v-myb, indicating that both proteins are truncated forms of c-Myb expressed from the same disrupted allele. p75c-myb and p85c-myb-E6A were indistinguishable with respect to nuclear localization and protein half-life. Furthermore, both forms of Myb were synthesized continuously throughout the cell cycle in 70Z ore-B cells. The contribution of the E6A domain to c-myb function remains to be elucidated.


Gene Therapy ◽  
2000 ◽  
Vol 7 (17) ◽  
pp. 1447-1457 ◽  
Author(s):  
S Braun ◽  
C Thioudellet ◽  
P Rodriguez ◽  
D Ali-Hadji ◽  
F Perraud ◽  
...  

1996 ◽  
Vol 7 (15) ◽  
pp. 1907-1914 ◽  
Author(s):  
Sarah Ehlen Haecker ◽  
Hansell H. Stedman ◽  
Rita J. Balice-Gordon ◽  
Daniel B. J. Smith ◽  
James P. Greelish ◽  
...  

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