scholarly journals The role of microbial community composition and groundwater chemistry in determining isoproturon degradation potential in UK aquifers

2004 ◽  
Vol 49 (1) ◽  
pp. 71-82 ◽  
Author(s):  
Andrew Johnson ◽  
Neville Llewellyn ◽  
Jennifer Smith ◽  
Christopher Gast ◽  
Andrew Lilley ◽  
...  
PLoS ONE ◽  
2016 ◽  
Vol 11 (10) ◽  
pp. e0165448 ◽  
Author(s):  
Marc D. Auffret ◽  
Kristiina Karhu ◽  
Amit Khachane ◽  
Jennifer A. J. Dungait ◽  
Fiona Fraser ◽  
...  

2014 ◽  
Vol 81 (4) ◽  
pp. 1257-1266 ◽  
Author(s):  
Matthieu Barret ◽  
Martial Briand ◽  
Sophie Bonneau ◽  
Anne Préveaux ◽  
Sophie Valière ◽  
...  

ABSTRACTSeeds carry complex microbial communities, which may exert beneficial or deleterious effects on plant growth and plant health. To date, the composition of microbial communities associated with seeds has been explored mainly through culture-based diversity studies and therefore remains largely unknown. In this work, we analyzed the structures of the seed microbiotas of different plants from the family Brassicaceae and their dynamics during germination and emergence through sequencing of three molecular markers: the ITS1 region of the fungal internal transcribed spacer, the V4 region of 16S rRNA gene, and a species-specific bacterial marker based on a fragment ofgyrB. Sequence analyses revealed important variations in microbial community composition between seed samples. Moreover, we found that emergence strongly influences the structure of the microbiota, with a marked reduction of bacterial and fungal diversity. This shift in the microbial community composition is mostly due to an increase in the relative abundance of some bacterial and fungal taxa possessing fast-growing abilities. Altogether, our results provide an estimation of the role of the seed as a source of inoculum for the seedling, which is crucial for practical applications in developing new strategies of inoculation for disease prevention.


2018 ◽  
Vol 118 ◽  
pp. 35-41 ◽  
Author(s):  
Yu-Rong Liu ◽  
Manuel Delgado-Baquerizo ◽  
Jun-Tao Wang ◽  
Hang-Wei Hu ◽  
Ziming Yang ◽  
...  

2021 ◽  
Author(s):  
Lijia Cao ◽  
David Wolff ◽  
Renato Liguori ◽  
Christian Wurzbacher ◽  
Arne Wick

Biofiltration processes help to remove trace organic chemicals (TOrCs) both in wastewater and drinking water treatment systems. However, the detailed TOrCs biotransformation mechanisms as well as the underlying drivers behind the variability of site specific transformation processes remain elusive. In this study, we used laboratory batch incubations to investigate the biotransformation of 51 TOrCs in eight bioactive filter materials of different origins treating a range of waters, from wastewater effluents to drinking water. Microscopy, 16S rRNA amplicon and whole metagenome sequencing for assessing associations between the biotransformation rate constants, microbial composition and genetic potential complemented chemical analysis. We observed strong differences in the mean global removal of TOrCs between the individual sand filters (-1.4% to 58%), which were mirrored in overall biomass, microbial community composition, and enzyme encoding genes. From the six investigated biomass markers, ATP turned out to be a major predictor of the mean global biotransformation rate, while compound specific biotransformations were correlated with the microbial community composition. High biomass ecosystems were indicated in our systems by a dominance of Nitrospirae, but individual TOrC biotransformation was statistically connected to rare taxa (< 2%) such as Hydrogenophaga, or indiviudal enzymes such as the enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase gene. In general, this study provides new insights into so far rarely addressed variability of TOrCs biotransformation. We propose novel biological indicators for the removal performance of TOrCs in biofiltration systems, highlighting the role of ATP in predicting and normalizing the global transformation, and the role of the microbial community for the individual transformation of TOrCs in engineered and natural systems.


2017 ◽  
Vol 6 (4) ◽  
pp. e00456 ◽  
Author(s):  
Shelesh Agrawal ◽  
Søren M. Karst ◽  
Eva M. Gilbert ◽  
Harald Horn ◽  
Per H. Nielsen ◽  
...  

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