Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities

2013 ◽  
Vol 6 (1) ◽  
pp. 102-109 ◽  
Author(s):  
Anna L. Bazzicalupo ◽  
Miklós Bálint ◽  
Imke Schmitt
1999 ◽  
Vol 31 (05) ◽  
pp. 477 ◽  
Author(s):  
Natalia V. Ivanova ◽  
Paula T. Depriest ◽  
Vera K. Bobrova ◽  
Alexey V. Troitsky

1999 ◽  
Vol 31 (5) ◽  
pp. 477-489 ◽  
Author(s):  
Natalia V. Ivanova ◽  
Paula T. Depriest ◽  
Vera K. Bobrova ◽  
Alexey V. Troitsky

AbstractThe lichen family Umbilicariaceae is accepted by most lichenologists as consisting of two genera, Lasallia and Umbilicaria. The monophyly of these two genera was examined by phylogenetic analyses of nucleotide sequences of ITS 1 and ITS2 rDNA. Sequences of these regions from three Lasallia and 17 Umbilicaria species were aligned to those of seven representatives of the outgroup taxa including Eurotiales, Onygenales and Caliciales (Mycocaliciaceae) and subjected to maximum parsimony, maximum likelihood and neighbour-joining analyses. The resulting phylogenetic hypotheses supported the monophyly of the representative species of Lasallia. However, the species of Umbilicaria did not form a monophyletic sistergroup to Lasallia due to the basal placement of other Umbilicaria species in some analyses. Based on these analyses, if Lasallia is recognized as a separate genus then Umbilicaria appears to be paraphyletic. Although further taxon sampling is required to resolve the monophyly of Umbilicaria, for the present we recommend retaining the current treatment of Lasallia as separate from Umbilicaria.


2011 ◽  
Vol 97 (2) ◽  
pp. 305-310 ◽  
Author(s):  
Dagmara Motriuk-Smith ◽  
R. Scott Seville ◽  
Leah Quealy ◽  
Clinton E. Oliver

2009 ◽  
Vol 53 (3) ◽  
pp. 749-757 ◽  
Author(s):  
Bernard LaRue ◽  
Christine Gaudreau ◽  
Hubert O. Bagre ◽  
Guy Charpentier

2018 ◽  
Vol 32 (5) ◽  
pp. 1102 ◽  
Author(s):  
M. Bo ◽  
M. Barucca ◽  
M. A. Biscotti ◽  
M. R. Brugler ◽  
A. Canapa ◽  
...  

The Mediterranean black coral fauna includes type species of four antipatharian genera belonging to four different families, therefore phylogenetic studies hold great potential for enhancing systematics within the order. The analysis of six Mediterranean antipatharian species by means of nuclear sequence data of internal transcribed spacer (ITS1 and ITS2) rDNA confirms the separation into different families, as was previously noted on a morphological basis, with a clear distinction of the family Leiopathidae, whose position is supported by a unique number of mesenteries and lack of spines on thicker ramifications. The position of a newly recorded black coral species for the Mediterranean basin belonging to the genus Phanopathes is discussed. Antipathes dichotoma, the type species of the genus Antipathes, on which the order Antipatharia was based, does not group with other members of the family Antipathidae. Supporting a recent finding based on mitochondrial markers, this suggests a critical need for revision of the families that will be impacted by reassignment of this nomenclaturally important taxon.


Parasitology ◽  
2012 ◽  
Vol 139 (10) ◽  
pp. 1346-1360 ◽  
Author(s):  
KIRILL V. GALAKTIONOV ◽  
ISABEL BLASCO-COSTA ◽  
PETER D. OLSON

SUMMARYThe ‘pygmaeus’ microphallids (MPG) are a closely related group of 6 digenean (Platyhelminthes: Trematoda) Microphallus species that share a derived 2-host life cycle in which metacercariae develop inside daughter sporocysts in the intermediate host (intertidal and subtidal gastropods, mostly of the genus Littorina) and are infective to marine birds (ducks, gulls and waders). Here we investigate MPG transmission patterns in coastal ecosystems and their diversification with respect to historical events, host switching and host-parasite co-evolution. Species phylogenies and phylogeographical reconstructions are estimated on the basis of 28S, ITS1 and ITS2 rDNA data and we use a combination of analyses to test the robustness and stability of the results, and the likelihood of alternative biogeographical scenarios. Results demonstrate that speciation within the MPG was not associated with co-speciation with either the first intermediate or final hosts, but rather by host-switching events coincident with glacial cycles in the Northern Hemisphere during the late Pliocene/Pleistocene. These resulted in the expansion of Pacific biota into the Arctic-North Atlantic and periodic isolation of Atlantic and Pacific populations. Thus we hypothesize that contemporary species of MPG and their host associations resulted from fragmentation of populations in regional refugia during stadials, and their subsequent range expansion from refugial centres during interstadials.


2011 ◽  
Vol 100 (1) ◽  
pp. 151-160 ◽  
Author(s):  
Ylva Lekberg ◽  
Tim Schnoor ◽  
Rasmus Kjøller ◽  
Sean M. Gibbons ◽  
Lars H. Hansen ◽  
...  

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