Characterization of simple sequence repeat loci for Peltigera membranacea (lichenized Ascomycota) and its Nostoc photobiont

To facilitate population-genetic studies, we developed simple sequence repeat (SSR) markers and a molecular species identification assay for Peltigera membranacea (Ascomycota, Peltigerales), a common ground-dwelling lichen of forest and tundra ecosystems. Additional markers were developed for its Nostoc photobiont. Twenty-one fungal markers for P. membranacea were found to be polymorphic, with the number of alleles ranging from 3–21. Nei's unbiased gene diversity ranged from 0.588 to 0.640 in four significantly structured (FST = 0.059) mycobiont populations. For the Nostoc photobiont, 14 polymorphic SSR were developed, yielding 4–14 alleles each, with gene diversity ranging from 0.062 to 0.771 in four populations showing substantial population structure (FST = 0.278). The new markers developed are suitable for population genetic studies of Peltigera membranacea and of its cyanobiont, and at the same time allowed us to distinguish 98.5% of P. membranacea specimens from morphologically similar species of Peltigera.

Multilocus-phylogeny of the lichen-forming genus Bacidia s. str. (Ramalinaceae, Lecanorales) with special emphasis on the Russian Far East

To clarify deep relationships among species lineages within Bacidia s. str., and to investigate the robustness of the deeper branches, we combined data from three traditionally used RNA-coding genes (nrITS, nrLSU and mtSSU) with two protein-coding genes (RPB1 and RPB2). The multigene phylogeny contained 48 newly generated sequences from the Russian Far East and all Bacidia s. str. sequences from GenBank (131 sequences). We subjected the alignments for the single and concatenated data sets to Bayesian inference (BI) and two maximum likelihood (ML) analyses (RAxML and IQ-TREE). The topologies of phylogenetic trees recovered from BI and ML analyses were highly concordant. The multilocus phylogeny of Bacidia s. str. was congruent with previous results based on nrITS sequences from the Russian Far East but with considerably higher support values for most of the deeper branches. A correlation between the recovered clades and apothecial pigments in the upper part of the hymenium and lateral exciple was observed. Based on morphological and molecular evidence, Bacidia obtecta is described as new to science. It was recovered as the sister lineage of B. elongata. The two species are alike in having up to four enlarged lumina cells along the exciple edge, but B. obtecta differs in the abundant crystals found in the upper hymenium and lateral exciple, and by having spores with fewer septa.

A synopsis of the genus Arthothelium (Arthoniales) in Tasmania

The genus Arthothelium A. Massal. in Tasmania comprises ten species. Five of these are described as new: A. bacidinum Kantvilas, a saxicolous, littoral species with subglobose apothecia, non-macrocephalic ascospores, 25−40 × 11−19 μm, and containing the pigment Endoaurantiacum-gold which yields a K+ red reaction; A. insolitum Kantvilas, lichenicolous in rainforest and characterized by subglobose apothecia, very large, non-macrocephalic ascospores, 50−80 × 22−40 μm, and containing the pigment Interveniens-brown which reacts K+ olive green; A. macounioides Kantvilas, corticolous in wet forest and characterized by sessile, convex apothecia, macrocephalic ascospores, 29−42 × 11−18 μm, and containing the pigment Endoaurantiacum-gold; A. magenteum Kantvilas, a common wet forest epiphyte with applanate apothecia, non-macrocephalic ascospores, 25−55 × 11−22 μm, and containing a unique maroon-red, K+ pink pigment; and A. subtectum Kantvilas, a saxicolous species with convex apothecia, macrocephalic ascospores, 22−36 × 9−14 μm, and containing Endoaurantiacum-gold. The New Zealand species A. endoaurantiacum Makhija & Patw. and A. suffusum (C. Knight) Müll. Arg., and the Australian A. velatium Müll. Arg. are recorded for Tasmania for the first time. The names A. obtusulum (Nyl.) Müll. Arg., A. pellucidum (C. Knight) Müll. Arg. and A. polycarpum Müll. Arg. are considered synonyms of the widespread A. ampliatum (C. Knight & Mitten) Müll. Arg. Arthothelium ferax Müll. Arg. is a synonym of A. interveniens (Nyl.) Zahlbr. and A. subspectabile Vĕzda & Kantvilas is a synonym of A. suffusum. The sole record of A. macrothecum (Fée) A. Massal. from Tasmania is found to be based on a misidentification. A key to the species is provided. The importance of apothecial pigments, apothecial morphology and ascospore septation is discussed, and three pigments are characterized by their appearance in water and other standard media.

Ramalina arsenii, an additional new species in the R. pollinaria group in Western Europe

Ramalina arsenii sp. nov. belongs to the R. pollinaria group and is easily recognized by its ITS barcode and several micro-morphological characters that are diagnostic in a European context: small size, less than 3 cm long; soralia developing on the underside of lobe apices; absence of excavate depressions on the lower side. Its ecological niche (i.e. rock outcrops and especially underhangs of slightly calcareous rocks, at low and mid altitudes) is also unique. Ramalina arsenii is frequent and locally abundant in France (Alps, Cantal) and Switzerland (western Alps), and is also known from Germany and the Spanish side of the Pyrenees.

Factors at multiple scales influence the composition of terricolous lichen communities in temperate semi-arid sandy grasslands

Inland dune ecosystems are rich in terricolous lichen species. However, these communities are sensitive to human activities, both locally and globally. Since terricolous lichens have a dominant role in semi-arid sandy grasslands, it is important to explore the composition of their communities and the environmental factors affecting them. We studied the structure of the terricolous lichen assemblages of calcareous grassland in an inland duneland ecosystem by comparing the lichen communities of arid and humid dune sides on two sites with different disturbance histories. Microcoenological data were collected according to the Braun-Blanquet method. Environmental variables include the cover of bare soil, moss, litter, herb cover and height of herbs. We investigated the relationship of these variables and the presence and absence data of terricolous lichen species to sites and dune side. We found that the site had a significant effect on species richness that might reflect the different types and severity of previous disturbance events at the studied sites. On a smaller, ‘dune’ scale, in general lower herb cover and height and a higher moss cover were characteristic of arid dune sides. Most of the frequent species were negatively affected by higher moss cover. Some lichen species were more abundant (e.g. Cladonia furcata) or found only (e.g. Xanthoparmelia subdiffluens, Gyalolechia fulgens) on arid dune sides, while others preferred (e.g. C. pyxidata) or occurred only on (e.g. Peltigera species, C. rei) humid sides. It was observed that the impact of the dune side on several variables differed between sites. The diverse microhabitat types, microclimate and landscape structure, results in species-rich and valuable terricolous lichen communities forming in inland dune ecosystems.

Shade lichens are characterized by rapid relaxation of non-photochemical quenching on transition to darkness

Non-photochemical quenching (NPQ) plays an important role in protecting photosynthetic organisms from photoinhibition by dissipating excess light energy as heat. However, excess NPQ can greatly reduce the quantum yield of photosynthesis at lower light levels. Recently, there has been considerable interest in understanding how plants balance NPQ to ensure optimal productivity in environments in which light levels are rapidly changing. In the present study, chlorophyll fluorescence was used to study the induction and relaxation of non-photochemical quenching (NPQ) in the dark and the induction of photosynthesis in ten species of lichens, five sampled from exposed and five sampled from shaded habitats. Here we show that the main difference between sun and shade lichens is the rate at which NPQ relaxes in the dark, rather than the speed that photosynthesis starts upon illumination. During the first two minutes in the dark, NPQ values in the five sun species declined only by an average of 2%, while by contrast, in shade species the average decline was 40%. For lichens growing in microhabitats where light levels are rapidly changing, rapid relaxation of NPQ may enable their photobionts to use the available light most efficiently.