scholarly journals Predation on desert tortoises (Gopherus agassizii) by desert canids

2021 ◽  
Vol 189 ◽  
pp. 104476
Author(s):  
Erica C. Kelly ◽  
Brian L. Cypher ◽  
Tory L. Westall
Keyword(s):  
2014 ◽  
Vol 41 (8) ◽  
pp. 641 ◽  
Author(s):  
Mickey Agha ◽  
Mason O. Murphy ◽  
Jeffrey E. Lovich ◽  
Joshua R. Ennen ◽  
Christian R. Oldham ◽  
...  

Context There is little information available on how research activities might cause stress responses in wildlife, especially responses of threatened species such as the desert tortoise (Gopherus agassizii). Aims The present study aims to detect behavioural effects of researcher handling and winter precipitation on a natural population of desert tortoises in the desert of Southwestern United States, over the period 1997 to 2014, through extensive assessments of capture events during multiple research studies, and capture–mark–recapture survivorship analysis. Methods Juvenile and adult desert tortoises were repeatedly handled with consistent methodology across 18 years during 10 study seasons. Using a generalised linear mixed-effects model, we assessed the effects of both research manipulation and abiotic conditions on probability of voiding. Additionally, we used a Cormack–Jolly–Seber model to assess the effects of winter precipitation and voiding on long-term apparent survivorship. Key results Of 1008 total capture events, voiding was recorded on 83 (8.2%) occasions in 42 different individuals. Our top models indicated that increases in handling time led to significantly higher probabilities of voiding for juveniles, females and males. Similarly, increases in precipitation resulted in significantly higher probabilities of voiding for juveniles and females, but not for males. Tortoise capture frequency was negatively correlated with voiding occurrence. Cormack–Jolly–Seber models demonstrated a weak effect of winter precipitation on survivorship, but a negligible effect for both voiding behaviour and sex. Conclusions Handling-induced voiding by desert tortoises may occur during common research activities and years of above average winter precipitation. Increased likelihood of voiding in individuals with relatively low numbers of recaptures suggested that tortoises may have perceived researchers initially as predators, and therefore voided as a defensive strategy. Voiding does not appear to impact long-term survivorship in desert tortoises at this site. Implications This study has demonstrated that common handling practices on desert tortoise may cause voiding behaviour. These results suggest that in order to minimise undesirable behavioural responses in studied desert tortoise populations, defined procedures or protocols must be followed by the investigators to reduce contact period to the extent feasible.


2001 ◽  
Vol 15 ◽  
pp. 158 ◽  
Author(s):  
Dawn S. Wilson ◽  
Kenneth A. Nagy ◽  
C. Richard Tracy ◽  
David J. Morafka ◽  
Rebecca A. Yates

1994 ◽  
Vol 8 ◽  
pp. 72 ◽  
Author(s):  
David C. Rostal ◽  
Valentine A. Lance ◽  
Janice S. Grumbles ◽  
Allison C. Alberts

2017 ◽  
Author(s):  
Timothy H Webster ◽  
Greer A. Dolby ◽  
Melissa Wilson Sayres ◽  
Kenro Kusumi

Exogenous sequence contamination presents a challenge in first-draft genomes because it can lead to non-contiguous, chimeric assembled sequences. This can mislead downstream analyses reliant on synteny, such as linkage-based analyses. Recently, the Mojave Desert Tortoise (Gopherus agassizii) draft genome was published as a resource to advance conservation efforts for the threatened species and discover more about chelonian biology and evolution. Here, we illustrate steps taken to improve the desert tortoise draft genome by removing contaminating sequences—actions that are typically carried out after the initial release of a draft genome assembly. We used information from NCBI’s Vecscreen output to remove intra-scaffold contamination and trim heading and trailing Ns. We then reordered and renamed scaffolds, and transferred the gene annotation onto this assembly. Finally, we describe the tools developed for this pipeline, freely available on Github (https://github.com/thw17/G_agassizii_reference_update), which facilitate post-assembly processing of other draft genomes. The new gopAga1.1 genome has an N50 of 251 KB, L50 of 2592 scaffolds, and its annotation retains 17,201 of the original 20,172 genes that were unaffected by the scaffold processing.


2018 ◽  
Author(s):  
Timothy H Webster ◽  
Greer A Dolby ◽  
Melissa A Wilson Sayres ◽  
Kenro Kusumi

Exogenous sequence contamination presents a challenge in first-draft genomes because it can lead to non-contiguous, chimeric assembled sequences. This can mislead downstream analyses reliant on synteny, such as linkage-based analyses. Recently, the Mojave Desert Tortoise (Gopherus agassizii) draft genome was published as a resource to advance conservation efforts for the threatened species and discover more about chelonian biology and evolution. Here, we illustrate steps taken to improve the desert tortoise draft genome by removing contaminating sequences—actions that are typically carried out after the initial release of a draft genome assembly. We used information from NCBI’s Vecscreen output to remove intra-scaffold contamination and trim heading and trailing Ns. We then reordered and renamed scaffolds, and transferred the gene annotation onto this assembly. Finally, we describe the tools developed for this pipeline, freely available on Github (https://github.com/thw17/G_agassizii_reference_update), which facilitate post-assembly processing of other draft genomes. The new gopAga1.1 genome has an N50 of 251 kb, L50 of 2592 scaffolds, and its annotation retains 17,201 of the original 20,172 genes that were unaffected by the scaffold processing.


2018 ◽  
Vol 27 (12) ◽  
pp. 851 ◽  
Author(s):  
Jeffrey E. Lovich ◽  
Mickey Agha ◽  
Joshua R. Ennen ◽  
Terence R. Arundel ◽  
Meaghan Austin

Wind turbine-induced fires at a wind energy facility in California, USA, provided an opportunity to study the before and after effects of fire on a population of protected Agassiz’s desert tortoises (Gopherus agassizii) in the Sonoran Desert, a species and ecosystem poorly adapted to fire. We compared annual activity areas (AAs) of tortoises in 2011 and 2013, before and after two 2012 fires, with those of tortoises in adjacent areas unaffected by the same fires. Tortoises in both AAs affected by fire or unaffected by fire occupied the same general AAs in 2013, after the fires, as they did in 2011, before the fires. Some tortoises had both their 2011 and 2013 AAs completely or almost completely within the areas burned by the 2012 fires, despite the proximity of unburned habitat. None of the tortoises with 2011 AAs subsequently unaffected by the 2012 fires shifted their AAs into burned habitat in 2013. For the fire-affected group of tortoises, the mean percentages of 2011 and 2013 AAs burned by the 2012 fires were not significantly different, showing fidelity to the burned areas. Tortoises in both groups generally occupied consistent AAs, even post fire, placing them at potential risk of exposure to unfavourable burned habitat.


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