scholarly journals An atomistic model of the coronavirus replication-transcription complex as a hexamer assembled around nsp15

2021 ◽  
Vol 297 (4) ◽  
pp. 101218
Author(s):  
Jason K. Perry ◽  
Todd C. Appleby ◽  
John P. Bilello ◽  
Joy Y. Feng ◽  
Uli Schmitz ◽  
...  
Keyword(s):  
2018 ◽  
Vol 115 (7) ◽  
pp. 1281-1291 ◽  
Author(s):  
Cheng Cheng ◽  
Motoshi Kamiya ◽  
Mizuki Takemoto ◽  
Ryuichiro Ishitani ◽  
Osamu Nureki ◽  
...  

1997 ◽  
Vol 484 ◽  
Author(s):  
Ravindra Pandey ◽  
Melvin C. Ohmer ◽  
A. Costales ◽  
J. M. Recio

AbstractAtomistic model has been applied to study various cation dopants, namely Cu, Ag, B, Al, Ga and In in ZnGeP2. The pairwise interatomic potential terms representing the interaction of dopants with the host lattice ions are derived using first principle methods. Defect calculations based on Mott-Littleton methodology predict small binding energies for Cu and Ag substituting Zn in the lattice which are in agreement with the available experimental data. The group III dopants (i.e. B, Al, Ga and In) at the Ge site are predicted to have large binding energies for a hole except B which shows a distinct behavior. This may be due to large mismatch in atomic sizes of B and Ge. At the Zn site, the calculated binding energies of the group III dopants place donor levels in the middle of the band gap.


2018 ◽  
Vol 15 ◽  
pp. 57-62
Author(s):  
Karel Mikeš ◽  
Ondřej Rokoš ◽  
Ron H. J. Peerlings

In this work, molecular statics is used to model a nanoindentation test on a two-dimensional hexagonal lattice. To this end, the QuasiContinuum (QC) method with adaptive propagation of the fully resolved domain is used to reduce the computational cost required by the full atomistic model. Three different adaptive mesh refinement criteria are introduced and tested, based on: (i) the Zienkiewicz–Zhu criterion (used for the deformation gradient), (ii) local atoms’ site energy, and (iii) local lattice disregistry. Accuracy and efficiency of individual refinement schemes are compared against the full atomistic model and obtained results are discussed.


2020 ◽  
Vol 1506 ◽  
pp. 012022 ◽  
Author(s):  
Phuong Thuy Bui ◽  
Trinh Xuan Hoang
Keyword(s):  

1984 ◽  
Vol 62 (1) ◽  
pp. 121-128 ◽  
Author(s):  
Timur Halicioglu ◽  
David M. Cooper
Keyword(s):  

2018 ◽  
Vol 9 (4) ◽  
Author(s):  
Daniel Valencia ◽  
Evan Wilson ◽  
Zhengping Jiang ◽  
Gustavo A. Valencia-Zapata ◽  
Kuang-Chung Wang ◽  
...  

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